View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_15 (Length: 449)
Name: NF6210_low_15
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 13 - 433
Target Start/End: Original strand, 36154247 - 36154667
Alignment:
| Q |
13 |
acatcatcaccctcaccacccttaccatcaacaacagcatcaccaccattaccagcaacaacagcaacagcaccatcaccaggattaagtacagttccgc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154247 |
acatcatcaccctcaccacccttaccatcaacaacagcatcaccaccattaccagcaacaacagcaacagcaccatcaccaggattaagtacagttccgc |
36154346 |
T |
|
| Q |
113 |
ttgttccaacaacaccaactggagcaccatcacccaccataacaatcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggtt |
212 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154347 |
ttgttccaacaacaccaactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggtt |
36154446 |
T |
|
| Q |
213 |
ctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcaggttccggtgggttaaccattttt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36154447 |
ctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcaggttccggagggttaaccattttt |
36154546 |
T |
|
| Q |
313 |
gcgccagaagattcttcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttacagtttcactcccttgctt |
412 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154547 |
gcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttacagtttcactcccttgctt |
36154646 |
T |
|
| Q |
413 |
cattcgtttctatttcaaact |
433 |
Q |
| |
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||||||||||||||||||||| |
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| T |
36154647 |
cattcgtttctatttcaaact |
36154667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 433
Target Start/End: Original strand, 36150861 - 36151281
Alignment:
| Q |
13 |
acatcatcaccctcaccacccttaccatcaacaacagcatcaccaccattaccagcaacaacagcaacagcaccatcaccaggattaagtacagttccgc |
112 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | |
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|
| T |
36150861 |
acatcatctccatcaccacccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccac |
36150960 |
T |
|
| Q |
113 |
ttgttccaacaacaccaactggagcaccatcacccaccataacaatcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggtt |
212 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36150961 |
ttgttccaacaacaccagctggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggtt |
36151060 |
T |
|
| Q |
213 |
ctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcaggttccggtgggttaaccattttt |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36151061 |
ctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcaggttccggtgggttaaccattttt |
36151160 |
T |
|
| Q |
313 |
gcgccagaagattcttcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttacagtttcactcccttgctt |
412 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36151161 |
gcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttacagtttcactcccttgctt |
36151260 |
T |
|
| Q |
413 |
cattcgtttctatttcaaact |
433 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
36151261 |
cattcgtttctatttcaaact |
36151281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 5273544 - 5273613
Alignment:
| Q |
197 |
aaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactc |
266 |
Q |
| |
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||||||| ||||| ||||| ||||| || ||||||||||||||||| || ||||| || ||||||||||| |
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| T |
5273544 |
aaaaagcaaaaagattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactc |
5273613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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