View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_16 (Length: 440)
Name: NF6210_low_16
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 31475493 - 31475082
Alignment:
| Q |
19 |
gctagtacgattgaacaactaaaaaattatcttaacttgctacagcagaaaaatctgaacctcgtcgacatgcttctgaagcatgtgaatgaatatgatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
31475493 |
gctagtacgattgaacaactaaaaaattatcttaacttgctacagcagaaaaatctgaacctcgttgacatgcttttgaagcatgtgaatgaatatgatg |
31475394 |
T |
|
| Q |
119 |
actctgaaattatgttgcccggccctaatttcatgatcgatgagttgccttcagatttaatcaactaccttcatgaaactgcgaagttcatggtaagtgc |
218 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31475393 |
actctgaaattatgttgcccagccttaatttcatgatcgatgagttgccttcagatttaatcaactaccttcatgaaaccgcgaagttcatggtaagtgc |
31475294 |
T |
|
| Q |
219 |
tgggtttgaggaagagttttctaatgtatacatcaattgtagaaggaaatgtttggaggagggtctaataaatagattattcggcttgcagaagattaaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
31475293 |
tgggtttgaggaagagttttctaatgtatacatcaattgtagaaggaaatgtttggaggagtgtctaataaatagattattcggcttgcagcagattaac |
31475194 |
T |
|
| Q |
319 |
atcaggaatgaaaatcaaagggtgaaatatgtagataatgtgattaaaaagtggatcacagcatcagaaatctctctgaagattctatttccatttgaac |
418 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31475193 |
atcatgaatgaaaatcaaagggtgaaatatgtagataatgtgattaaaaagtggatcacagcatcagaaatctctctgaagattctatttccatttgaac |
31475094 |
T |
|
| Q |
419 |
aacgactctgtg |
430 |
Q |
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| T |
31475093 |
aacgactctgtg |
31475082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 40842875 - 40842705
Alignment:
| Q |
19 |
gctagtacgattgaacaactaaaaaattatcttaacttgctacagcagaaaaatctgaacctcgtcgacatgcttctgaagcatgtgaatgaatatgatg |
118 |
Q |
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||||||||||| |||||||||||||||||||||||| |||| || ||||||||| ||||||| |||||||||||| |||||||||| ||||||||||||| |
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| T |
40842875 |
gctagtacgatggaacaactaaaaaattatcttaacatgcttcatcagaaaaatttgaaccttgtcgacatgcttttgaagcatgtcaatgaatatgatg |
40842776 |
T |
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| Q |
119 |
actctgaaattatgttgcccggccctaatttcatgatcgatgagttgccttcagatttaatcaactacctt |
189 |
Q |
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|||||||| | ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
40842775 |
actctgaattgatgttgcccggccctaacttcatgatcgatgagttgcctccagatttgatcaactacctt |
40842705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 370 - 430
Target Start/End: Complemental strand, 40842702 - 40842642
Alignment:
| Q |
370 |
tggatcacagcatcagaaatctctctgaagattctatttccatttgaacaacgactctgtg |
430 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
40842702 |
tggatcacagcatcagaaatcgctcttaagattctatttccatttgaacaacgactctgtg |
40842642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 178 - 422
Target Start/End: Complemental strand, 6037165 - 6036923
Alignment:
| Q |
178 |
atcaactaccttcatgaaactgcgaagttcatggtaagtgctgggtttgaggaagagttttctaatgtatacatcaattgtagaaggaaatgtttggagg |
277 |
Q |
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|||||||||||||||||||| | ||||| ||||| || ||||| ||||||||||||||||||| |||||| | | ||||||||| |||||||||||||| |
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| T |
6037165 |
atcaactaccttcatgaaaccacaaagttgatggtgagggctggatttgaggaagagttttcta-tgtatataccgattgtagaaagaaatgtttggagg |
6037067 |
T |
|
| Q |
278 |
agggtctaataaatagattattcggcttgcagaagattaaaatcaggaatgaaaatcaaagggtgaaatatgtagataatgtgattaaaaagtggatcac |
377 |
Q |
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|| || ||||||||||||||||| ||| |||||||||||| |||| || |||| |||||| |||||||||| |||||| |||||||||| ||||||| |
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| T |
6037066 |
agtgtataataaatagattattcagctggcagaagattaacatcaagattgaacatcaaaaggtgaaatatctagataccgtgattaaaagatggatcaa |
6036967 |
T |
|
| Q |
378 |
agcatcagaaatctctctgaagattctatttccatttgaacaacg |
422 |
Q |
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| T |
6036966 |
atcatcagatatctctctcaa-attttatttccatccgaacaacg |
6036923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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