View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_17 (Length: 432)
Name: NF6210_low_17
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 9 - 416
Target Start/End: Complemental strand, 46042168 - 46041761
Alignment:
| Q |
9 |
agcagagaaatatgatcatctatcaaaggagctacaaagcgcgaaccgcacaattgccaccgtttttcctgaacaagtccattatagaatagacgaagat |
108 |
Q |
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| T |
46042168 |
agcagagaaatatgatcatctatcaaaggagctacaaagcgcgaaccgcacaattgccaccgtttttcctgaacaagtccattatagaatagacgaagat |
46042069 |
T |
|
| Q |
109 |
gaagatgaagaaagtgtccctgaaactaattcattacctcctaaccctaataaccaaacagaaaaacaacgcaacatccctaaacctccaagtatcccaa |
208 |
Q |
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| T |
46042068 |
gaagatgaagaaagtgtccctgaaactaattcattacctcctaaccctaataaccaaacagaaaaacaatgcaacatccctaaacctccaagtatcccaa |
46041969 |
T |
|
| Q |
209 |
agaaggtttttcgaagtcagtctatgttgctatcaagaaaaggaacacatagaagaagtgtcagctcggaaaaatctgtttcaaatccaacaattcaatg |
308 |
Q |
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| T |
46041968 |
agaaggtttttcgaagtcagtctatgttgctatcaagaaaaggaacacatagaagaagtgtcagctcggaaaaatctgtttcaaatccaacaattcaatg |
46041869 |
T |
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| Q |
309 |
ttcaggtttgagtaaggttgaagcattagctgaaatagacaagcttcagaaagaaattttggcattgcaaactgagaaagagtttgtaaggagtttgtat |
408 |
Q |
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| T |
46041868 |
ttcaggtttgagtaaggttgaagcattagctgaaatagacaagcttcagaaagaaattttggcattgcaaactgagaaagagtttgtaaggagtttgtat |
46041769 |
T |
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| Q |
409 |
gaacattc |
416 |
Q |
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| T |
46041768 |
gaacattc |
46041761 |
T |
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