View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_low_2 (Length: 627)

Name: NF6210_low_2
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_low_2
NF6210_low_2
[»] chr4 (16 HSPs)
chr4 (20-316)||(8036248-8036541)
chr4 (384-613)||(8042038-8042267)
chr4 (25-297)||(8041667-8041939)
chr4 (36-316)||(8416287-8416567)
chr4 (25-297)||(8410653-8410925)
chr4 (28-273)||(9138857-9139102)
chr4 (384-551)||(8036609-8036776)
chr4 (389-613)||(9139681-9139890)
chr4 (468-614)||(8410363-8410509)
chr4 (137-273)||(8356480-8356616)
chr4 (137-273)||(8403626-8403762)
chr4 (388-545)||(8416069-8416211)
chr4 (137-273)||(43144839-43144975)
chr4 (137-273)||(8359526-8359662)
chr4 (36-89)||(8359437-8359490)
chr4 (450-518)||(8359968-8360036)
[»] chr7 (2 HSPs)
chr7 (137-273)||(5476165-5476301)
chr7 (36-109)||(5476320-5476393)
[»] chr2 (1 HSPs)
chr2 (23-97)||(33084019-33084093)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 8036248 - 8036541
Alignment:
Q  20 cacgcatccaagcattaatagtaagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaaga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||    
T  8036248 cacgcatccaagcattaatagtaagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaag---catttgaaga 8036344  T
Q  120 tgtatctccagaccgagtatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttca 219  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8036345 tgtaactccagaccgagtatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttca 8036444  T
Q  220 agaaacctcagtatgtggagcaatatgcagtcaggcaactcactaatcctattttcctgccgctgtcgcttcagttcctggtttgataaacaacttg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8036445 agaaacctcagtatgtggagcaatatgcagtcaggcaactcactaatcctattttcctgccgctgtcgcttcagttcctggttggataaacaacttg 8036541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 384 - 613
Target Start/End: Original strand, 8042038 - 8042267
Alignment:
Q  384 caactttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacc 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8042038 caactttttccaataaattattgtcactgttattataatcttaaaaataaacaatcttaccttatggtttttgatttgttggggtgtgattggcggaacc 8042137  T
Q  484 caattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacggaaacttccattaccta 583  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  8042138 caattgtgatttatccactggcgatgaaccctaagaaggtcttttggaaacacaatctcttccgagtctgtaaaacacacacggaaacttccattcccta 8042237  T
Q  584 aatcttcgctaacgcagccttcccaccacc 613  Q
    |||||||  |||||| ||||||||||||||    
T  8042238 aatcttcaataacgcggccttcccaccacc 8042267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 25 - 297
Target Start/End: Original strand, 8041667 - 8041939
Alignment:
Q  25 atccaagcattaatagtaagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaagatgtat 124  Q
    |||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||| || | | || ||||  |||||||||     
T  8041667 atccaagcatcaatagtaagattaagtagggaatatgagtgatctctactggacagaacccaagacataaatttcttagatctttcatacgaagatgtaa 8041766  T
Q  125 ctccagaccgagtatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaa 224  Q
     |  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  8041767 gtggagacggagtatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtccgaacagcatctcgtgcttcaagaaa 8041866  T
Q  225 cctcagtatgtggagcaatatgcagtcaggcaactcactaatcctattttcctgccgctgtcgcttcagttcc 297  Q
     | || | ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  8041867 acccaatgtgtggagcaatatgcagtcaggcaaatcactaatcctatcttcctgccgctgtcgcttcagttcc 8041939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 36 - 316
Target Start/End: Complemental strand, 8416567 - 8416287
Alignment:
Q  36 aatagtaagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaagatgtatctccagaccga 135  Q
    |||||| |||||||| || |||||||| ||||||||| |||||||||||||||||||||||| || | | | || ||  |||||||||  |  |||| ||    
T  8416567 aatagttagattaagtagggaatatgaatgatctctaatggacagaacccaagacataaatttcttatacccataatacgaagatgtaaatagagacgga 8416468  T
Q  136 gtatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgt 235  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||| |    
T  8416467 gtatatgtgagagtagtgaggcgtttgcaaagatccttccaccgtttagacaagatacaagtccgaacagcatctcgtgcttcaagaaaactcaatatat 8416368  T
Q  236 ggagcaatatgcagtcaggcaactcactaatcctattttcctgccgctgtcgcttcagttcctggtttgataaacaacttg 316  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  8416367 ggagcaataagcagtcaggcaactcactaatcctattttcccgccgctgtcgcttcagttcctggttggataaacaacttg 8416287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 25 - 297
Target Start/End: Complemental strand, 8410925 - 8410653
Alignment:
Q  25 atccaagcattaatagtaagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaagatgtat 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || |||||| ||||  ||| ||||||    
T  8410925 atccaagcattaatagtaagattaagcagtgaatatgagtgatctctactggacagaacccaagacataaagttcttaaaactttcatccgaatatgtat 8410826  T
Q  125 ctccagaccgagtatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaa 224  Q
     |  |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||    
T  8410825 gtatagacggagtatatgtgagagtagtgaggcgtttgcaaagatccttccaccgtttagacaagatgcaagtccgaacagcatctcgtgcttcaagaaa 8410726  T
Q  225 cctcagtatgtggagcaatatgcagtcaggcaactcactaatcctattttcctgccgctgtcgcttcagttcc 297  Q
     |||| ||| | |||||||| ||||||||||||||||||||||||||||||| ||  ||||  ||||||||||    
T  8410725 actcaatatctagagcaataagcagtcaggcaactcactaatcctattttcccgcatctgtgtcttcagttcc 8410653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 28 - 273
Target Start/End: Original strand, 9138857 - 9139102
Alignment:
Q  28 caagcattaatagtaagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaagatgtatctc 127  Q
    |||||||  |||||||||||||| |||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||  |     
T  9138857 caagcatggatagtaagattaagtagtgaagatgagtgatctctactcgacagaacccaagacataaattgctcaaaactatcattcgaagatgtaagta 9138956  T
Q  128 cagaccgagtatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacct 227  Q
     |  | ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||    
T  9138957 aaaccggagtatatgtgagagtagtgaggcatttgcaaagatccttccaccgtttagacaagatgcaagtccgaacagcatcttgtgcttcaagaaaact 9139056  T
Q  228 cagtatgtggagcaatatgcagtcaggcaactcactaatcctattt 273  Q
    || |||||||||||||||||||||||||||||||| ||||||||||    
T  9139057 caatatgtggagcaatatgcagtcaggcaactcacaaatcctattt 9139102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 384 - 551
Target Start/End: Original strand, 8036609 - 8036776
Alignment:
Q  384 caactttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacc 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8036609 caactttttccaataaattattgtcactgttattataatcttaaaaataaactatcttaccttatggtttttgatttgttggggtgtgactggcggaacc 8036708  T
Q  484 caattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtc 551  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8036709 caattgtgattaatccactggcgatgaaccctaagaaggtcttttggaaacaccatctcttccaagtc 8036776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 389 - 613
Target Start/End: Original strand, 9139681 - 9139890
Alignment:
Q  389 ttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacccaatt 488  Q
    |||||||| |||||||||  ||||||||||||||||||||||||||  | |||||||||||||||               |||||||| |||||||||||    
T  9139681 ttttccaacaaattattgctactgttattataatcttaaaaataaactaccttaccttatggttt---------------gtgattgggggaacccaatt 9139765  T
Q  489 gtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacggaaacttccattacctaaatct 588  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| | || |||||||| |||||||||    
T  9139766 gtgattaatccactggcgatgaatcctaagaaggtcttttggaaacaccatctcttccgagtctgtaaaacacacaagaaatcttccattccctaaatct 9139865  T
Q  589 tcgctaacgcagccttcccaccacc 613  Q
     ||||||||| ||||||||||||||    
T  9139866 gcgctaacgcggccttcccaccacc 9139890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 468 - 614
Target Start/End: Complemental strand, 8410509 - 8410363
Alignment:
Q  468 tgtgattggaggaacccaattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacgg 567  Q
    ||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||| |  ||||||||||||| |||||     
T  8410509 tgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtcttttggaaacacaatctctcctgagtctgtaaaacacacacga 8410410  T
Q  568 aaacttccattacctaaatcttcgctaacgcagccttcccaccacct 614  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||||    
T  8410409 aaacttccattccctaaatcttcgctaacacggccttcccaccacct 8410363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 137 - 273
Target Start/End: Original strand, 8356480 - 8356616
Alignment:
Q  137 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtg 236  Q
    ||||||||||| ||| || ||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||| |||||||||||| |||| ||||||    
T  8356480 tatatgtgagaatagggaggcgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacaacatcttctgcttcaagaaaactcaatatgtg 8356579  T
Q  237 gagcaatatgcagtcaggcaactcactaatcctattt 273  Q
    || ||||| |||||| |||||||||||||||||||||    
T  8356580 gaccaataagcagtctggcaactcactaatcctattt 8356616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 137 - 273
Target Start/End: Complemental strand, 8403762 - 8403626
Alignment:
Q  137 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtg 236  Q
    |||||| |||||||||||  |||||||||||||||||||| |||||||||||||| |||||| ||||||| ||| ||||||||||||| |||| ||||||    
T  8403762 tatatgcgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtctcgtgcttcaagaaaactcattatgtg 8403663  T
Q  237 gagcaatatgcagtcaggcaactcactaatcctattt 273  Q
    ||| | |||||||||||| ||||||| ||||||||||    
T  8403662 gaggagtatgcagtcaggtaactcaccaatcctattt 8403626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 388 - 545
Target Start/End: Complemental strand, 8416211 - 8416069
Alignment:
Q  388 tttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacccaat 487  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||||||||||||               |||||||| ||||||||||    
T  8416211 tttttccaacaaattattgttactgttattataatcttaaaaataaactatcttaccttatggttt---------------gtgattgggggaacccaat 8416127  T
Q  488 tgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttc 545  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  8416126 tgtgattaatccactggcgatgaaccctaagaaggtcttttggaaacacaatctcttc 8416069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 137 - 273
Target Start/End: Original strand, 43144839 - 43144975
Alignment:
Q  137 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtg 236  Q
    ||||| ||||||||||||| |||||||||||||||||||| || ||||||||||| |||||  ||||| | ||| ||||||||||||| |||| ||| ||    
T  43144839 tatatttgagagtagtgacacgtttgcaaagatccttccatcgcttagacaagatgcaagttcgaacaacgtctcgtgcttcaagaaaactcattatatg 43144938  T
Q  237 gagcaatatgcagtcaggcaactcactaatcctattt 273  Q
    ||||| ||||||||| |||||||||||||||| ||||    
T  43144939 gagcagtatgcagtcgggcaactcactaatccaattt 43144975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 137 - 273
Target Start/End: Original strand, 8359526 - 8359662
Alignment:
Q  137 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtg 236  Q
    ||||||||||||||| ||  |||||||||||||||||||| |||||||||||||| |||||  ||||||| ||| | ||||  | ||| |||| ||||||    
T  8359526 tatatgtgagagtagggagacgtttgcaaagatccttccatcgtttagacaagatgcaagttcgaacagcgtctcgagctttcaaaaaactcattatgtg 8359625  T
Q  237 gagcaatatgcagtcaggcaactcactaatcctattt 273  Q
    ||||| |||||||||||| |||| ||| ||| |||||    
T  8359626 gagcagtatgcagtcaggtaacttactgatcatattt 8359662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 8359437 - 8359490
Alignment:
Q  36 aatagtaagattaagcagtgaatatgagtgatctctattggacagaacccaaga 89  Q
    ||||||||||||||| || ||| |||||||||||||| | ||| ||||||||||    
T  8359437 aatagtaagattaagtagggaacatgagtgatctctactagaccgaacccaaga 8359490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 518
Target Start/End: Original strand, 8359968 - 8360036
Alignment:
Q  450 gtttttgatttgttggggtgtgattggaggaacccaattgtgatttatccactggcgttgaaccctaag 518  Q
    |||||||| |||||||  ||||||| | ||||||||||||||||| ||||| |  || |||||||||||    
T  8359968 gtttttgagttgttggtttgtgattcggggaacccaattgtgattaatccatttacgatgaaccctaag 8360036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 137 - 273
Target Start/End: Complemental strand, 5476301 - 5476165
Alignment:
Q  137 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtg 236  Q
    ||||||||||||||||||  |||||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||||||| |||| ||||||    
T  5476301 tatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcatctcgtgcttcaagaaaactcattatgtg 5476202  T
Q  237 gagcaatatgcagtcaggcaactcactaatcctattt 273  Q
    ||| | |||||||||||| ||||||||||||||||||    
T  5476201 gaggagtatgcagtcaggtaactcactaatcctattt 5476165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 5476393 - 5476320
Alignment:
Q  36 aatagtaagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaactat 109  Q
    ||||||||||||   ||||||| |||| ||||||||| | ||||||||||||||| |||| | || ||||||||    
T  5476393 aatagtaagattccacagtgaacatgattgatctctactagacagaacccaagacttaaagttcttaaaactat 5476320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 33084093 - 33084019
Alignment:
Q  23 gcatccaagcattaatagtaagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaatt 97  Q
    |||||||| ||| || |||||||||||| |||||| | |||||||||||| ||||||||| ||||||||||||||    
T  33084093 gcatccaaccatcaacagtaagattaagtagtgaacaggagtgatctctactggacagaatccaagacataaatt 33084019  T

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