View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6210_low_22 (Length: 410)
Name: NF6210_low_22
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 30904928 - 30904546
Alignment:
| Q |
18 |
aaaaagatggtactttttcgcctctttcatttctttcgttctggtgactagtgatgatatttgtaacttttgatgaagttataaactaattaattcgtct |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30904928 |
aaaaagatggtacttttttgcctctttcatttctttcgttctggtgaatagtgatgatatttgtaacttttgatgaagttataaactaattaattcgtct |
30904829 |
T |
|
| Q |
118 |
atttcgttactgcaggctactaaaataagtgtaggtgtagatgtctgcatgagttatgaaagaaaattttacttcaatctccctgaggttcagaaggctc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30904828 |
atttcgttactgcaggctactaaaataagtgtaggtgtagatgtctgcatgagttatgaaagaaaattttacttcaatctccctgaggttcaaaaggctc |
30904729 |
T |
|
| Q |
218 |
tccatgcgaaccgtaccaatttgccgtattcatggtccatgtgcagtgggtaagtataaattataatgcatgctttggtataactattattagcgaaact |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30904728 |
tccatgcgaaccgtaccaatttgccgtattcatggtccatgtgcagtgggtaagtataaattataatgcatgctttcgtataactattattagcgaaact |
30904629 |
T |
|
| Q |
318 |
caagtcccataaactagagatattgtcttaatatagcttataaaatataaataatcattgccttacatgttgattttcttcga |
400 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
30904628 |
caagtcctataaactagagatatcgtcttaatatagcttataaaatataaacaatcattgccttacatgttgattttgttcga |
30904546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 104 - 278
Target Start/End: Complemental strand, 40960104 - 40959930
Alignment:
| Q |
104 |
taattaattcgtctatttcgttactgcaggctactaaaataagtgtaggtgtagatgtctgcatgagttatgaaagaaaattttacttcaatctccctga |
203 |
Q |
| |
|
||||||||| || |||||| ||| |||||||||||||||||||| || ||||||| || || || ||||||||| |||| |||| || ||||| |
|
|
| T |
40960104 |
taattaatttgtttatttcattaatgcaggctactaaaataagtttaagtgtagacgtttgtatagattatgaaagctttaattacctcaacctgcctga |
40960005 |
T |
|
| Q |
204 |
ggttcagaaggctctccatgcgaaccgtaccaatttgccgtattcatggtccatgtgcagtgggtaagtataaat |
278 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| |||| ||| ||||| |||||| |||| |||||||||||| |
|
|
| T |
40960004 |
ggttcagaaggctctccatgccaaccgtactaatctgccatatccatggggcatgtgtagtgagtaagtataaat |
40959930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 40973565 - 40973641
Alignment:
| Q |
202 |
gaggttcagaaggctctccatgcgaaccgtaccaatttgccgtattcatggtccatgtgcagtgggtaagtataaat |
278 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||| |
|
|
| T |
40973565 |
gaggttcagaaggctctccatgctaaccgtaccaatttgccctatccatggtctatgtgtagtgggtgagtataaat |
40973641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University