View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6210_low_24 (Length: 382)
Name: NF6210_low_24
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_24 |
 | |
|
| [»] scaffold0057 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 46844540 - 46844888
Alignment:
| Q |
19 |
cttattacatcaaaggaaagtatgatttgctaatttgtgtccgattagaattagaacgattccttgaaggaatgatagtgaataccatgagatcttgaac |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46844540 |
cttattacatcaaaggaaagtataatttgctaatttgtgtccgattagaattagaccgattccttgaaggaatgatagtgaataccatgagatcttgaac |
46844639 |
T |
|
| Q |
119 |
ctagttgcattattgcattgcaggggtgagatggcattttgcagccatgaatgccgtgaccagaggatgttgttggaggacgtgatgcctatataacaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46844640 |
ctagttgcattattgcattgcaggggtgagatggcattttgcagccatgaatgccgtgaccagaggatgttgttggaggacgtgatgcctatatagcac- |
46844738 |
T |
|
| Q |
219 |
aaagatgcctaaattggaagctaacgatgattgagtatgtgacataattccacctaaacaaaaacaatttgacctttgcttcaatggacttagaatatga |
318 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46844739 |
-aagatgcctaaattggaagctaaggatgattgagtatgtgacataattccacctaaacaaaaacaatttgacctttgcttcaatggacttagaatatga |
46844837 |
T |
|
| Q |
319 |
aataatcctcagaaatcttatatcaaagtgcttgattttgatctctctgct |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46844838 |
aataatcctcagaaatcttatatcaaagtgcttgattttgatctctctgct |
46844888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 48986 - 48929
Alignment:
| Q |
141 |
ggggtgagatggcattttgcagccatgaatgccgtgaccagaggatgttgttggagga |
198 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| ||||||||| |||||||||| |
|
|
| T |
48986 |
ggggtgagatggcattttgcaaccctgaatgccgtaaccagaggaaactgttggagga |
48929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University