View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_3 (Length: 605)
Name: NF6210_low_3
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_3 |
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| [»] scaffold0558 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 6 - 589
Target Start/End: Original strand, 34651403 - 34651988
Alignment:
| Q |
6 |
agcagcacagaaagctgagaaagtagtgaatgaggctcaatctggtggggcaaaagcagctgcaaactatgtagctacagaatctaaacaaattgtgcta |
105 |
Q |
| |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
34651403 |
agcaacacacaaagctgagaaagtagtgaatgaggctcaatctggtggggcaaaaacagctgcaaattatgtagctacaaaatctaaacaaattgtgcta |
34651502 |
T |
|
| Q |
106 |
acaagttcagtaaaaatatggtcaggtctcaaccactatccaccattccatgcagtggcagagatggcagttccaacagctgcacattggtcagaaaagt |
205 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34651503 |
acaagttcagtaaaaatatggttaggtctcaaccactatccaccattccatgcagtggcagagatggcagttccaacagctgcacattggtcagaaaagt |
34651602 |
T |
|
| Q |
206 |
ataaccatgttgttaaggacattactggaaagggatacacagtgtttggatatttgcctttgattcctattgatgaaatagccaaggcatttaaacaagg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34651603 |
ataaccatgttgttaaggacattactggaaagggatacacagtgtttggatatttgcctttgattcctattgatgaaatagccaaggcatttaaacaggg |
34651702 |
T |
|
| Q |
306 |
ggaagttaatgtgagtgcagatcatgaaacatcttctggtgaagatttttctgattgagcactagtactactactagctattttcttcacataatgtaat |
405 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34651703 |
ggaagttaatgtgagtgtagatcatgaaacatcttctggtgaagatttttctgattgagtactagtactactactagctattttcttcacataatgtaat |
34651802 |
T |
|
| Q |
406 |
gtggttgagaaagatgtagagg--gtgtgtaggtatgaatggaaatgtaagaaattatgagaacagactatgtagcttaacattaacaaagtctgtggaa |
503 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34651803 |
gtggttgagaaagatgtagagggtgtgtgtaggtatgaatggaaatgtaagaaattatgagaacagactatgtagcttaatattaacaaagtctgtggaa |
34651902 |
T |
|
| Q |
504 |
tataatatgatcacgccaattctgagttaaatatgaagcttgttttgtctttttcttagcataaaatattgttttgattatgtttt |
589 |
Q |
| |
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|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34651903 |
cataatatgatcatgccaattctgagttaaatatcaagcttgttttgtctttttcttagcataaaatattgttttgattatgtttt |
34651988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Original strand, 24407064 - 24407580
Alignment:
| Q |
17 |
aagctgagaaagtagtgaatgaggctcaatctggtggggcaaaagcagctgcaaactatgtagctacagaatctaaacaaattgtgctaacaagttcagt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| |||| ||| |
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| T |
24407064 |
aagctgagaaagtagtgaatgaggctcaatctggtggggcaaaagcagctgtaaattatgtagctacaaaatctaaacaaattgtgctaactagtttagt |
24407163 |
T |
|
| Q |
117 |
aaaaatatggtcaggtctcaaccactatccaccattccatgcagtggcagagatggcagttccaacagctgcacattggtcagaaaagtataaccatgtt |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
24407164 |
aaaaatatggtcaggtctcaaccactatccaccattccatgcagtggcagagatggcagttccaacaactgcacgttggtcagaaaagtataaccatgtt |
24407263 |
T |
|
| Q |
217 |
gttaaggacattactggaaagggatacacagtgtttggatatttgcctttgattcctattgatgaaatagccaaggcatttaaacaaggggaagttaatg |
316 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24407264 |
gttaaggacattactagaaagggatacacagtgtttggatatttgcctttgattcctattgatgaaatagccaaggcatttaaacaaggggaagttaatg |
24407363 |
T |
|
| Q |
317 |
tgagtgcagatcatgaaacatcttctggtgaagatttttctgattgagcactagtactactactagctattttcttcacataatgtaatgtggttgagaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24407364 |
tgagtgcagatcatgaaacatcttctggtgaagatttttctgattgagtactagtactactactagctattttcttcacataatgtaatgtggttgagaa |
24407463 |
T |
|
| Q |
417 |
agatgtagagggtgtgtaggtatgaatggaaatgtaagaaattatgagaacagactatgtagcttaacattaacaaagtctgtggaatataatatgatca |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
24407464 |
agatgtagagggtgtgtaggtatgaatggaaatgtaagaaattatgagaacagactatgtagcttaatattaacaaagtctgtggaacataatatgatca |
24407563 |
T |
|
| Q |
517 |
cgccaattctgagttaaa |
534 |
Q |
| |
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||||| ||||||||||| |
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| T |
24407564 |
tgccaa-tctgagttaaa |
24407580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0558 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0558
Description:
Target: scaffold0558; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 468 - 534
Target Start/End: Complemental strand, 4659 - 4593
Alignment:
| Q |
468 |
agactatgtagcttaacattaacaaagtctgtggaatataatatgatcacgccaattctgagttaaa |
534 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
4659 |
agactatgtagcttaatattaacaaagtctgtggaacataatatgatcatgccaattctgagttaaa |
4593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 28909975 - 28909901
Alignment:
| Q |
122 |
tatggtcaggtctcaaccactatccaccattccatgcagtggcagagatggcagttccaacagctgcacattggt |
196 |
Q |
| |
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|||| |||||| ||||||| ||||||| ||| ||| |||||||||||||||| ||||||||||||||||| |||| |
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| T |
28909975 |
tatgatcaggtttcaaccattatccacaatttcattcagtggcagagatggcggttccaacagctgcacagtggt |
28909901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 314
Target Start/End: Complemental strand, 38577167 - 38576997
Alignment:
| Q |
144 |
tccaccattccatgcagtggcagagatggcagttccaacagctgcacattggtcagaaaagtataaccatgttgttaaggacattactggaaagggatac |
243 |
Q |
| |
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||||||||||||||||||||||||||| || |||| || ||||| || ||||| || ||||| ||||||| | |||||||| |||||||||| || |
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| T |
38577167 |
tccaccattccatgcagtggcagagataacaattcccactgctgctcactggtctgagaagtacaaccatgcaatcaaggacatggctggaaagggttat |
38577068 |
T |
|
| Q |
244 |
acagtgtttggatatttgcctttgattcctattgatgaaatagccaaggcatttaaacaaggggaagttaa |
314 |
Q |
| |
|
| | |||| ||||| |||||||||||||| ||| ||| | ||||||||||| || || |||||||| |
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|
| T |
38577067 |
agttttgttgggtatttacctttgattcctataaatgctatatctaaggcatttaagcagggagaagttaa |
38576997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 28910809 - 28910746
Alignment:
| Q |
16 |
aaagctgagaaagtagtgaatgaggctcaatctggtggggcaaaagcagctgcaaactatgtagc |
80 |
Q |
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||||||||||||||| | |||||| | |||| | |||||||||||||||||||||| |||||||| |
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| T |
28910809 |
aaagctgagaaagtaattaatgagacacaat-tagtggggcaaaagcagctgcaaattatgtagc |
28910746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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