View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6210_low_30 (Length: 365)
Name: NF6210_low_30
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_30 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 24634594 - 24634237
Alignment:
| Q |
1 |
ttgaaacataaattagaagatcctgtttactagttagctattgttccttgttatcttcttcactttcatatagactgatgtataaataaggtccattgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24634594 |
ttgaaacataaattagaagatcctgtttactacttaactattgttccttgttatcttcttcactttcatatagactgatgtataaataaggtccattgag |
24634495 |
T |
|
| Q |
101 |
ttcattatgatcaattcatcacgttatcaataaatgagacatttcatttacaagaaatcagaactaggcttttgtaagacttgtttccagcaataaaaca |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24634494 |
ttcattatgatcaattcatcaagttatcaataaatgagacatttcatttacaagaaatcagaactaggctcttgtaagacttgtttccagcaataaaaca |
24634395 |
T |
|
| Q |
201 |
caataatctttagatacacatgtttaaccttcattttcatatcagaaccggactggcatggagagacggtaccatttgactattaatattttacttgacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24634394 |
caataatctttagatacacatgtttaaccttcattttcatatcagaaccggactggcatggagagacgataccatttgactattaatattttacttgacc |
24634295 |
T |
|
| Q |
301 |
gactagagaaacctcacttaacactggtttgaatgttcaagtcatgccatctctgctc |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24634294 |
gactagagaaacctcacttaacactggtttgaatgttcaagtcatgccatctcagctc |
24634237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 358
Target Start/End: Original strand, 32876770 - 32876858
Alignment:
| Q |
270 |
taccatttgactattaatattttacttgaccgactagagaaacctcacttaacactggtttgaatgttcaagtcatgccatctctgctc |
358 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||| | | |||||| ||||||||||||| ||||||||||| |||| ||| |||| |
|
|
| T |
32876770 |
taccatgtgacttgtaataccttacttgaccgactagcaagatctcactcaacactggtttgattgttcaagtcaggccagctcagctc |
32876858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University