View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_32 (Length: 364)
Name: NF6210_low_32
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 36 - 349
Target Start/End: Complemental strand, 2210646 - 2210333
Alignment:
| Q |
36 |
aaactaaccgaaaaacatcccagcaactatcaagaccaggaataggaggaggaaaaccatctttagcgaagatgctacgataagcaggtcctcttgaagg |
135 |
Q |
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| T |
2210646 |
aaactaaccgaaaaacatcccagcaactatcaagaccaagaataggaggaggaaaaccatctttagcgaagatgctacgatacgcaggtcctcttgaagg |
2210547 |
T |
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| Q |
136 |
tttatcctccgttgctgccttcgctttttcaacctcaatgatgaatcttttctgcgccatgtctcaacaacgatcgcgaagagaaaaatggttaagttaa |
235 |
Q |
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| T |
2210546 |
tttatcttccgttgcttccttcgctttttcaacctcaatgatgaatcttttctgcgccatggctcaacgatgatcgcgatgagaaaaatggttaagttaa |
2210447 |
T |
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| Q |
236 |
gcggagaatgagaaattttaaatgttatttcttagtgttcttataatacaagaacatgtgtttatgttgtatgcattggagatcaataaggtggatgaca |
335 |
Q |
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| T |
2210446 |
gcggagaatgagaaattttaaatgttatttcttagtgttcttagaatacaagaacatgtgcttatgttgtatgcattggagatcaataaggtggatgaca |
2210347 |
T |
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| Q |
336 |
ctgtagagaacagt |
349 |
Q |
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| T |
2210346 |
ctgtagagaacagt |
2210333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 2198451 - 2198208
Alignment:
| Q |
16 |
atgaacattgatttgcatcgaaactaaccgaaaaacatcccagcaactatcaagaccaggaataggaggaggaaaaccatctttagcgaagatgctacga |
115 |
Q |
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| T |
2198451 |
atgaacattgatttgcatcgaaactaaccgaaaaacatcccagcaactatcaagaccaggaataggaggaggaaatccatccttagcgaagatactgcga |
2198352 |
T |
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| Q |
116 |
taagcaggtcctcttgaaggtttatcctccgttgctgccttcgctttttcaacctcaatgatgaatcttttctgcgccatgtctcaacaacgatcgcgaa |
215 |
Q |
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| T |
2198351 |
tacgcaggtcctcttgaaggtttatcctccgttgctgccttcgctttttcaacctcaatgatgaatctttcctgcgccatggctcaataacgatagcgaa |
2198252 |
T |
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| Q |
216 |
gagaaaaatggttaagttaagcggagaatgagaaattttaaatg |
259 |
Q |
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| T |
2198251 |
gagaaaaatggttaagttaagcggagaatgagaaattttaaatg |
2198208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 337
Target Start/End: Complemental strand, 11727380 - 11727311
Alignment:
| Q |
268 |
tagtgttcttataatacaagaacatgtgtttatgttgtatgcattggagatcaataaggtggatgacact |
337 |
Q |
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| T |
11727380 |
tagtgttcttagcaatcaagaacatatttttatgttatatgcattggagatcaatgagttggatgccact |
11727311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 258 - 345
Target Start/End: Original strand, 33948369 - 33948456
Alignment:
| Q |
258 |
tgttatttcttagtgttcttataatacaagaacatgtgtttatgttgtatgcattggagatcaataaggtggatgacactgtagagaa |
345 |
Q |
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| T |
33948369 |
tgttctttcttagtgttcttagcaaacaagaacatatttttatgttctatgtattggagatcaatgaggtggatgacactgtggagaa |
33948456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 345
Target Start/End: Original strand, 31704723 - 31704810
Alignment:
| Q |
258 |
tgttatttcttagtgttcttataatacaagaacatgtgtttatgttgtatgcattggagatcaataaggtggatgacactgtagagaa |
345 |
Q |
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| T |
31704723 |
tgttctttcttagtattcttagcaaacaagaacatatttttatgttgtatgcattggagatcgttgagctggatgacactgtggagaa |
31704810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 349
Target Start/End: Original strand, 47680279 - 47680370
Alignment:
| Q |
258 |
tgttatttcttagtgttcttataatacaagaacatgtgtttatgttgtatgcattggagatcaataaggtggatgacactgtagagaacagt |
349 |
Q |
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| T |
47680279 |
tgttctttcttggtgttcttagcaaacaagaacatatttttatattttatgcattggagatcaatgagctggatgacattgtggagaacagt |
47680370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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