View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_low_36 (Length: 339)

Name: NF6210_low_36
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_low_36
NF6210_low_36
[»] chr7 (22 HSPs)
chr7 (79-320)||(10031928-10032170)
chr7 (217-320)||(1360532-1360635)
chr7 (8-59)||(5825307-5825358)
chr7 (9-59)||(30216080-30216130)
chr7 (5-60)||(40726501-40726556)
chr7 (12-59)||(28517309-28517356)
chr7 (9-60)||(45613863-45613914)
chr7 (9-59)||(19277328-19277378)
chr7 (10-59)||(21326860-21326909)
chr7 (267-320)||(28251979-28252032)
chr7 (11-59)||(24527626-24527674)
chr7 (191-246)||(28770446-28770502)
chr7 (9-53)||(48539216-48539260)
chr7 (254-309)||(3256645-3256700)
chr7 (254-305)||(15995922-15995973)
chr7 (9-59)||(982984-983034)
chr7 (9-51)||(22198021-22198063)
chr7 (9-51)||(22239758-22239800)
chr7 (191-244)||(27123243-27123297)
chr7 (255-308)||(24450523-24450576)
chr7 (254-290)||(17157806-17157842)
chr7 (217-290)||(33887889-33887962)
[»] chr5 (22 HSPs)
chr5 (192-320)||(779056-779184)
chr5 (5-58)||(35310479-35310532)
chr5 (5-59)||(13166932-13166986)
chr5 (1-59)||(33692077-33692135)
chr5 (5-59)||(37873660-37873714)
chr5 (191-246)||(18229683-18229738)
chr5 (191-306)||(41583512-41583628)
chr5 (5-59)||(25663054-25663108)
chr5 (191-303)||(8247036-8247149)
chr5 (12-60)||(9829373-9829421)
chr5 (11-59)||(14423715-14423763)
chr5 (191-246)||(30501221-30501277)
chr5 (191-246)||(30541564-30541620)
chr5 (191-290)||(31672380-31672481)
chr5 (255-318)||(27833299-27833362)
chr5 (5-60)||(38875669-38875724)
chr5 (12-58)||(430640-430686)
chr5 (9-59)||(42921732-42921782)
chr5 (9-59)||(43129569-43129619)
chr5 (254-320)||(3758233-3758301)
chr5 (254-294)||(14042496-14042536)
chr5 (196-228)||(17692365-17692397)
[»] chr3 (18 HSPs)
chr3 (191-320)||(48322213-48322342)
chr3 (12-59)||(38146094-38146141)
chr3 (5-59)||(26772789-26772843)
chr3 (1-59)||(37133021-37133079)
chr3 (9-59)||(53785744-53785794)
chr3 (10-59)||(26856784-26856833)
chr3 (2-59)||(44198795-44198852)
chr3 (5-53)||(7900889-7900937)
chr3 (254-320)||(40546360-40546427)
chr3 (12-59)||(52741534-52741581)
chr3 (5-54)||(5338674-5338723)
chr3 (193-246)||(16867537-16867590)
chr3 (6-59)||(52411913-52411966)
chr3 (254-306)||(25548219-25548271)
chr3 (254-306)||(28874525-28874577)
chr3 (191-246)||(29611989-29612045)
chr3 (254-290)||(36600509-36600545)
chr3 (10-58)||(51234652-51234700)
[»] chr2 (21 HSPs)
chr2 (217-320)||(2888904-2889007)
chr2 (191-320)||(2825963-2826093)
chr2 (254-308)||(14102318-14102372)
chr2 (254-320)||(27948017-27948084)
chr2 (217-320)||(16717605-16717708)
chr2 (9-59)||(19161805-19161855)
chr2 (254-318)||(31513785-31513850)
chr2 (5-53)||(28225031-28225079)
chr2 (9-59)||(4413088-4413138)
chr2 (191-320)||(3882585-3882715)
chr2 (9-58)||(41867931-41867980)
chr2 (11-59)||(17344675-17344723)
chr2 (255-315)||(18227156-18227216)
chr2 (12-59)||(5532457-5532504)
chr2 (254-309)||(8964425-8964480)
chr2 (12-59)||(9685437-9685484)
chr2 (262-308)||(6581589-6581635)
chr2 (255-309)||(19495237-19495291)
chr2 (191-236)||(2769337-2769382)
chr2 (12-53)||(20142753-20142794)
chr2 (187-246)||(4762314-4762374)
[»] chr1 (24 HSPs)
chr1 (254-308)||(2633064-2633118)
chr1 (191-290)||(34445638-34445738)
chr1 (254-308)||(17554891-17554945)
chr1 (1-59)||(20259819-20259877)
chr1 (219-320)||(37037645-37037747)
chr1 (192-309)||(37705847-37705965)
chr1 (9-60)||(28041148-28041199)
chr1 (217-309)||(33744153-33744245)
chr1 (262-320)||(9053854-9053912)
chr1 (13-59)||(19035486-19035532)
chr1 (13-59)||(21473042-21473088)
chr1 (254-308)||(26687572-26687626)
chr1 (9-59)||(29169815-29169865)
chr1 (12-57)||(43831600-43831645)
chr1 (10-59)||(45659670-45659719)
chr1 (254-306)||(35438050-35438102)
chr1 (254-309)||(15549640-15549695)
chr1 (254-324)||(7481377-7481447)
chr1 (262-308)||(14774143-14774189)
chr1 (254-290)||(4039639-4039675)
chr1 (256-300)||(15057826-15057870)
chr1 (191-246)||(31807861-31807917)
chr1 (191-246)||(39150551-39150607)
chr1 (191-246)||(48022434-48022490)
[»] chr8 (11 HSPs)
chr8 (262-315)||(40299689-40299742)
chr8 (256-308)||(27055945-27055997)
chr8 (192-290)||(42760184-42760282)
chr8 (9-59)||(500262-500312)
chr8 (5-59)||(3188000-3188054)
chr8 (5-59)||(38815325-38815379)
chr8 (191-235)||(9200007-9200051)
chr8 (5-60)||(25021835-25021890)
chr8 (254-320)||(22209439-22209505)
chr8 (16-53)||(36004164-36004201)
chr8 (191-246)||(16723276-16723332)
[»] chr6 (11 HSPs)
chr6 (255-320)||(12605995-12606060)
chr6 (254-320)||(13063888-13063954)
chr6 (254-320)||(13070512-13070578)
chr6 (5-59)||(33220733-33220787)
chr6 (5-60)||(17249326-17249381)
chr6 (254-320)||(13070649-13070715)
chr6 (5-59)||(34304527-34304581)
chr6 (5-59)||(34554299-34554353)
chr6 (1-59)||(45699-45757)
chr6 (9-59)||(4165944-4165994)
chr6 (254-294)||(12383051-12383091)
[»] scaffold0148 (1 HSPs)
scaffold0148 (9-59)||(33285-33335)
[»] chr4 (12 HSPs)
chr4 (192-309)||(53737812-53737930)
chr4 (191-319)||(8297840-8297970)
chr4 (254-317)||(41370178-41370241)
chr4 (1-60)||(48656931-48656990)
chr4 (254-292)||(23230270-23230308)
chr4 (5-51)||(55933492-55933538)
chr4 (10-59)||(30940761-30940809)
chr4 (5-58)||(31847118-31847171)
chr4 (5-53)||(3330027-3330075)
chr4 (31-59)||(7536593-7536621)
chr4 (217-306)||(12618715-12618804)
chr4 (9-53)||(50483224-50483268)
[»] scaffold0291 (1 HSPs)
scaffold0291 (217-308)||(11683-11774)
[»] scaffold0031 (1 HSPs)
scaffold0031 (2-59)||(49439-49496)
[»] scaffold0009 (1 HSPs)
scaffold0009 (9-53)||(103141-103185)
[»] scaffold0490 (1 HSPs)
scaffold0490 (11-59)||(6371-6419)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 79 - 320
Target Start/End: Complemental strand, 10032170 - 10031928
Alignment:
Q  79 aaataacgatttagattaagagagataaacacctccatgcaagatatgagagaactccaaattttaataatgatctacaacaaattttacaataacttat 178  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032170 aaataacgatttaaattaagagagataaacacctccatgcaagatatgagagaactccaaattttaataatgatctacaacaaattttacaataacttat 10032071  T
Q  179 caattacgaaatggtcttgttaacgagtacccccggg-tactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttcc 277  Q
    |||||||||||  |||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  10032070 caattacgaaagtgtctcgttaacgagtgcccccgggacactctttaagcattccaaaattagtaattatttttttaaaaagttaaatgtttcgatttcc 10031971  T
Q  278 aatgcattgattatacactttttcataaatacatactatttat 320  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  10031970 aatgcattgattacacactttttcataaatacatactatttat 10031928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 1360532 - 1360635
Alignment:
Q  217 actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatacatactat 316  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||     
T  1360532 actctttaagcattccaaaattagtaattattttttaaaaaagttaaatgtttcgatttccaatgcattgattacacacttttttataaatacatactac 1360631  T
Q  317 ttat 320  Q
    ||||    
T  1360632 ttat 1360635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 5825307 - 5825358
Alignment:
Q  8 gccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  5825307 gccgaaagtgtcaaaagtaaatggtataaaaacatgttgattgtcataacac 5825358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 30216130 - 30216080
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  30216130 ccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcaaaacac 30216080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 40726556 - 40726501
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 60  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||| ||||||    
T  40726556 gaagccgaaagtgtcaaaaacaaatggtataaaaacatgttgattgtcagaacaca 40726501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 28517356 - 28517309
Alignment:
Q  12 aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||||||||||| | ||||||||||||||||||||||||| ||||||    
T  28517356 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtctaaacac 28517309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 45613914 - 45613863
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 60  Q
    |||||||||||||||  | |||||||||||||||||||||||||| ||||||    
T  45613914 ccgaaagtgtcaaaatcaaatggtataaaaacatgttgattgtcagaacaca 45613863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 19277328 - 19277378
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  19277328 ccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 19277378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 21326909 - 21326860
Alignment:
Q  10 cgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  21326909 cgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 21326860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 28252032 - 28251979
Alignment:
Q  267 tttcgatttccaatgcattgattatacactttttcataaatacatactatttat 320  Q
    ||||||||| |||||||||||||||| || ||||||||||||| ||||| ||||    
T  28252032 tttcgattttcaatgcattgattatatacattttcataaatacttactaattat 28251979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 24527626 - 24527674
Alignment:
Q  11 gaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  24527626 gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 24527674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 28770446 - 28770502
Alignment:
Q  191 ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaatta 246  Q
    |||||||||||||||| || |||||  ||||||||||||| ||||||||||||||||    
T  28770446 ggtcttgttaacgagtgcctccggggcactctttaagcatcccaaaattagtaatta 28770502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 48539216 - 48539260
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca 53  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||    
T  48539216 ccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 48539260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 3256700 - 3256645
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatac 309  Q
    ||||||| |||||||||||||||||||||| ||| || |||  |||||||||||||    
T  3256700 aaaaagtcaaatgtttcgatttccaatgcactgaatacacatattttcataaatac 3256645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 15995922 - 15995973
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataa 305  Q
    |||||||||||| ||||||||| |||||||||||||| |||  |||||||||    
T  15995922 aaaaagttaaatatttcgattttcaatgcattgattacacatattttcataa 15995973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 982984 - 983034
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||| ||||||| | ||||||||||| |||||||||||||| |||||    
T  982984 ccgaaagtatcaaaagcaaatggtataaaagcatgttgattgtcagaacac 983034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 22198021 - 22198063
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgt 51  Q
    ||||||||| |||||| | ||||||||||||||||||||||||    
T  22198021 ccgaaagtgacaaaagcaaatggtataaaaacatgttgattgt 22198063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 22239800 - 22239758
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgt 51  Q
    ||||||||| |||||| | ||||||||||||||||||||||||    
T  22239800 ccgaaagtgacaaaagcaaatggtataaaaacatgttgattgt 22239758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 27123243 - 27123297
Alignment:
Q  191 ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaat 244  Q
    |||||||||||||||| ||||| ||| ||||||||||||| ||||| ||||||||    
T  27123243 ggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaat 27123297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 24450576 - 24450523
Alignment:
Q  255 aaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaata 308  Q
    |||||| |||| ||||||||||||||||||||| || || | ||||||||||||    
T  24450576 aaaagtaaaatatttcgatttccaatgcattgaatacacgcattttcataaata 24450523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 17157842 - 17157806
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgatta 290  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  17157842 aaaaagtcaaatgtttcaatttccaatgcattgatta 17157806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 33887962 - 33887889
Alignment:
Q  217 actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta 290  Q
    ||||||||||||||||||||| | ||||||       ||||||| |||| |||| |||| ||||||||||||||    
T  33887962 actctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgatta 33887889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 320
Target Start/End: Original strand, 779056 - 779184
Alignment:
Q  192 gtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta 290  Q
    ||||||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  779056 gtcttgttaacgagtgccccctgggcactctttaaacattcaaaaattagtaattatttttt-aaaaagttaaatgtttcgatttccaatgcattgatta 779154  T
Q  291 tacactttttcataaatacatactatttat 320  Q
     |||||||||| ||||||||||||||||||    
T  779155 cacactttttcgtaaatacatactatttat 779184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 35310479 - 35310532
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca 58  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||| ||||    
T  35310479 gaagccgaaagtgtcaaaagcagatggtataaaagcatgttgattgtcagaaca 35310532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 13166986 - 13166932
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  13166986 gaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 13166932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33692135 - 33692077
Alignment:
Q  1 ctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||||||||||||| | |||||| |||| |||||||||||||| |||||    
T  33692135 ctaagaagccgaaagtgtcaaaagcaaatggtacaaaagcatgttgattgtcataacac 33692077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 37873714 - 37873660
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||| ||||||||||||| | |||||||||||||||||||||||||| |||||    
T  37873714 gaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacac 37873660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 18229738 - 18229683
Alignment:
Q  191 ggtcttgttaacgagtacccccgggtactctttaagcattccaaaattagtaatta 246  Q
    |||||||||||||||| |||||  ||||||||||||||| ||||| ||||||||||    
T  18229738 ggtcttgttaacgagtgcccccaagtactctttaagcatcccaaatttagtaatta 18229683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 306
Target Start/End: Original strand, 41583512 - 41583628
Alignment:
Q  191 ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt 289  Q
    |||||||||||||||| ||||||||| |||||||||| || ||||| |||| |||||       |||||||||||| || | | |||||||||||||| |    
T  41583512 ggtcttgttaacgagtgcccccgggtcactctttaaggatcccaaatttagaaattattccttcaaaaagttaaatattacaaattccaatgcattgaat 41583611  T
Q  290 atacactttttcataaa 306  Q
    | |||  ||||||||||    
T  41583612 acacagattttcataaa 41583628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 25663108 - 25663054
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||| |||||||||||||| | |||||||||||||||||||||| ||| |||||    
T  25663108 gaagctgaaagtgtcaaaagcaaatggtataaaaacatgttgattatcagaacac 25663054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 303
Target Start/End: Original strand, 8247036 - 8247149
Alignment:
Q  191 ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt 289  Q
    |||||||||||||||| |||||| |  |||||||||| |||||||||  || ||| |       ||||||| |||| ||||||||||| |||||||||||    
T  8247036 ggtcttgttaacgagtgcccccgtgacactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatatttcgatttccgatgcattgatt 8247135  T
Q  290 atacactttttcat 303  Q
    |||||  |||||||    
T  8247136 atacaacttttcat 8247149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 9829421 - 9829373
Alignment:
Q  12 aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 60  Q
    |||||||||||  || ||||||||||| |||||||||||||||||||||    
T  9829421 aaagtgtcaaatataaatggtataaaagcatgttgattgtcaaaacaca 9829373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 14423715 - 14423763
Alignment:
Q  11 gaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  14423715 gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 14423763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 30501277 - 30501221
Alignment:
Q  191 ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaatta 246  Q
    |||||||||||||||| ||||| ||| ||||||||||||| ||||| ||||||||||    
T  30501277 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaatta 30501221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 30541620 - 30541564
Alignment:
Q  191 ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaatta 246  Q
    |||||||||||||||| ||||| ||| ||||||||||||| ||||| ||||||||||    
T  30541620 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaatta 30541564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 290
Target Start/End: Original strand, 31672380 - 31672481
Alignment:
Q  191 ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaatta-nnnnnnnaaaaagttaaatgtttcgatttccaatgcattgat 288  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||  || || ||        ||||||| ||||||||| |||||||||||||||||    
T  31672380 ggtcttgttaacgagtgcccccggggcactctttaagcattccaaaaggagaaactattccataaaaaaagtcaaatgtttcaatttccaatgcattgat 31672479  T
Q  289 ta 290  Q
    ||    
T  31672480 ta 31672481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 27833362 - 27833299
Alignment:
Q  255 aaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatacatactattt 318  Q
    |||||| |||| ||||||||| |||||||||||||| |  | ||||||||||||| ||||||||    
T  27833362 aaaagtcaaatatttcgatttacaatgcattgattacatgcattttcataaatacttactattt 27833299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 38875669 - 38875724
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 60  Q
    ||||| |||||||||||||  | |||||| ||||||||||||||||||| ||||||    
T  38875669 gaagctgaaagtgtcaaaaacaaatggtacaaaaacatgttgattgtcagaacaca 38875724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 430640 - 430686
Alignment:
Q  12 aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca 58  Q
    ||||||||||||| | ||||||||||| |||||||||||||| ||||    
T  430640 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaaca 430686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 42921732 - 42921782
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||| ||| | ||||||||||| |||||||||||||| |||||    
T  42921732 ccgaaagtgtcataagcaaatggtataaaagcatgttgattgtcagaacac 42921782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 43129569 - 43129619
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||| ||||||||| | |||||| ||||||||||||||||||| |||||    
T  43129569 ccgaaaatgtcaaaagcaaatggtagaaaaacatgttgattgtcagaacac 43129619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 3758233 - 3758301
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattataca--ctttttcataaatacatactatttat 320  Q
    ||||||| |||| ||||||||| ||||||||||| ||||||   |||||||||||||| ||| ||||||    
T  3758233 aaaaagtcaaatatttcgattttcaatgcattgaatatacattttttttcataaatacttacaatttat 3758301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 14042496 - 14042536
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattataca 294  Q
    ||||||| |||| ||| ||||||||||||||||||||||||    
T  14042496 aaaaagtcaaatattttgatttccaatgcattgattataca 14042536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 17692397 - 17692365
Alignment:
Q  196 tgttaacgagtacccccgggtactctttaagca 228  Q
    ||||||||||| |||||||||||||||||||||    
T  17692397 tgttaacgagtgcccccgggtactctttaagca 17692365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 320
Target Start/End: Complemental strand, 48322342 - 48322213
Alignment:
Q  191 ggtcttgttaacgagtacccccgggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta 290  Q
    |||||||||||||||||  |  ||||||||||||||||||| ||||| ||||||||       ||||||| ||||||||||||||||||| |||||||||    
T  48322342 ggtcttgttaacgagtattcaggggtactctttaagcattctaaaataagtaattatttttttaaaaagtcaaatgtttcgatttccaatacattgatta 48322243  T
Q  291 tacactttttcataaatacatactatttat 320  Q
     |   |||||||||||||| ||||| ||||    
T  48322242 catgttttttcataaatacctactacttat 48322213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 38146094 - 38146141
Alignment:
Q  12 aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  38146094 aaagtgtcaaatgtaaatggtataaaaacatgttgattgtcaaaacac 38146141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 26772789 - 26772843
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||| ||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  26772789 gaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 26772843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 37133079 - 37133021
Alignment:
Q  1 ctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||||| |||||||||| ||||  | |||||||||||||||||||||||||| |||||    
T  37133079 ctaagaaaccgaaagtgtaaaaaacaaatggtataaaaacatgttgattgtcagaacac 37133021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 53785744 - 53785794
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  53785744 ccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 53785794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 26856833 - 26856784
Alignment:
Q  10 cgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||| |||||||| ||||||||||||| |||||||||||||| |||||    
T  26856833 cgaaagcgtcaaaagcagatggtataaaagcatgttgattgtcacaacac 26856784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 44198795 - 44198852
Alignment:
Q  2 taagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||| |||||||||||||||| | ||||||||||| |||||||||| ||| |||||    
T  44198795 taagaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattctcagaacac 44198852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 7900889 - 7900937
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca 53  Q
    |||||||||||||||||||  | ||||||||||| ||||||||||||||    
T  7900889 gaagccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtca 7900937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 40546360 - 40546427
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacac-tttttcataaatacatactatttat 320  Q
    ||||||| |||| |||||||||||||||||||||||| |  | |||||||||||||| ||||| ||||    
T  40546360 aaaaagtcaaatatttcgatttccaatgcattgattacatgcatttttcataaatacttactacttat 40546427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 52741581 - 52741534
Alignment:
Q  12 aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  52741581 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 52741534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 5338674 - 5338723
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaa 54  Q
    |||||||||||||||||||| | || |||||||| |||||||| ||||||    
T  5338674 gaagccgaaagtgtcaaaagcaaattgtataaaagcatgttgactgtcaa 5338723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 16867590 - 16867537
Alignment:
Q  193 tcttgttaacgagtacccccgggtactctttaagcattccaaaattagtaatta 246  Q
    ||||||||| || |||| |||| ||||||||||||||||| |||| ||||||||    
T  16867590 tcttgttaaggattacctccggatactctttaagcattcctaaataagtaatta 16867537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 52411966 - 52411913
Alignment:
Q  6 aagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||| |||||||||||||| | |||| |||||| |||||||||||||| |||||    
T  52411966 aagctgaaagtgtcaaaagcaaatggaataaaagcatgttgattgtcagaacac 52411913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 25548271 - 25548219
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaa 306  Q
    |||||||||||| |||| ||||| ||||||||||||| |||  ||||||||||    
T  25548271 aaaaagttaaatatttcaatttctaatgcattgattacacatattttcataaa 25548219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 28874525 - 28874577
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaa 306  Q
    ||||||| ||||||| | | ||||||||||||||||| ||| |||||||||||    
T  28874525 aaaaagtaaaatgttacaaattccaatgcattgattacacagtttttcataaa 28874577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 29611989 - 29612045
Alignment:
Q  191 ggtcttgttaacgagtacccccggg-tactctttaagcattccaaaattagtaatta 246  Q
    |||||||||||||||| ||||||||  ||||||||| ||||| ||||| ||||||||    
T  29611989 ggtcttgttaacgagtgcccccgggacactctttaaacattctaaaataagtaatta 29612045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 36600545 - 36600509
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgatta 290  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  36600545 aaaaagttaaatttttcgatttcccatgcattgatta 36600509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 51234652 - 51234700
Alignment:
Q  10 cgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca 58  Q
    |||||||||||||| || ||||||||||| ||||||| |||||| ||||    
T  51234652 cgaaagtgtcaaaaataaatggtataaaagcatgttggttgtcataaca 51234700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 2888904 - 2889007
Alignment:
Q  217 actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatacatactat 316  Q
    |||||||||||| | ||||||| |||||||       |||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||     
T  2888904 actctttaagcacttcaaaatttgtaattattttttaaaaaagttaaatatttcgatttccaatgtattgactacacactttttcataaatacatactac 2889003  T
Q  317 ttat 320  Q
    ||||    
T  2889004 ttat 2889007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 320
Target Start/End: Complemental strand, 2826093 - 2825963
Alignment:
Q  191 ggtcttgttaacgagtacccccg-ggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt 289  Q
    ||||||||||||||||  ||| | |||||||||||||||| | ||||| || |||||       ||||||| |||| |||||||||||||||||||||||    
T  2826093 ggtcttgttaacgagtgtccctgtggtactctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcattgatt 2825994  T
Q  290 atacactttttcataaatacatactatttat 320  Q
    | |||| |||| |||||||| ||||| ||||    
T  2825993 acacacatttttataaatacttactacttat 2825963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 14102372 - 14102318
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaata 308  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||    
T  14102372 aaaaagttaaatatttcgatttccaatacattgattacacactttttcataaata 14102318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 27948084 - 27948017
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgatt-atacactttttcataaatacatactatttat 320  Q
    ||||||| |||||||||||||||||||||||||||| | |||| ||||||||||||| ||||| ||||    
T  27948084 aaaaagtcaaatgtttcgatttccaatgcattgattaacacacattttcataaatacttactacttat 27948017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 16717605 - 16717708
Alignment:
Q  217 actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatacatactat 316  Q
    ||||||||||||||| ||||| ||||||||       ||||| |||||| ||| ||||||||| ||||||||||||  | ||||||||||||| |||||     
T  16717605 actctttaagcattctaaaataagtaattattctttaaaaaaattaaatattttgatttccaaagcattgattatatgcattttcataaatacttactac 16717704  T
Q  317 ttat 320  Q
    ||||    
T  16717705 ttat 16717708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 19161855 - 19161805
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||||| | |||||||||||||||||||||||||| |||||    
T  19161855 ccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacac 19161805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 31513785 - 31513850
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattataca-ctttttcataaatacatactattt 318  Q
    ||||| ||||||||||||||||||||||||||||||| |||  |||||||||||||  ||||||||    
T  31513785 aaaaatttaaatgtttcgatttccaatgcattgattacacatttttttcataaatagttactattt 31513850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 28225031 - 28225079
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca 53  Q
    |||||||||||||||||||| | ||||||||||| ||||||||||||||    
T  28225031 gaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 28225079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 4413138 - 4413088
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  4413138 ccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 4413088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 320
Target Start/End: Original strand, 3882585 - 3882715
Alignment:
Q  191 ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt 289  Q
    |||||||||||||||| ||| ||||  ||||||||||||||| ||||| || |||||       |||| || |||| ||||| ||| |||||||||||||    
T  3882585 ggtcttgttaacgagtgccctcggggcactctttaagcattctaaaataagcaattattctttaaaaaggtcaaatatttcggttttcaatgcattgatt 3882684  T
Q  290 atacactttttcataaatacatactatttat 320  Q
    | |||| ||||||| | ||| ||||| ||||    
T  3882685 acacacattttcatgagtacttactacttat 3882715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 41867980 - 41867931
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca 58  Q
    |||||||||||||||| | ||||||||||| |||||||||||||| ||||    
T  41867980 ccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaaca 41867931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 17344675 - 17344723
Alignment:
Q  11 gaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||| | ||||||||||| |||||||||||| |||||||    
T  17344675 gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtgaaaacac 17344723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 18227156 - 18227216
Alignment:
Q  255 aaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatacatacta 315  Q
    |||||| |||| ||||||||| |||||||||||||| | || ||||||||||||| |||||    
T  18227156 aaaagtcaaatatttcgattttcaatgcattgattaaatacattttcataaatacttacta 18227216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 5532457 - 5532504
Alignment:
Q  12 aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||||||||||||| || |||||||| |||||||||||||| |||||    
T  5532457 aaagtgtcaaaagtaaatagtataaaagcatgttgattgtcacaacac 5532504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 8964425 - 8964480
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatac 309  Q
    ||||||| |||| |||| ||||||||||||||||||| |||  |||||||||||||    
T  8964425 aaaaagtaaaatatttcaatttccaatgcattgattacacaaattttcataaatac 8964480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 9685484 - 9685437
Alignment:
Q  12 aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  9685484 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 9685437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 6581589 - 6581635
Alignment:
Q  262 aaatgtttcgatttccaatgcattgattatacactttttcataaata 308  Q
    |||||||| ||||  |||||||||||||| |||||||||||||||||    
T  6581589 aaatgttttgattctcaatgcattgattacacactttttcataaata 6581635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 19495237 - 19495291
Alignment:
Q  255 aaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatac 309  Q
    |||||| |||| |||||||||||||||||||||||| || | |||| ||||||||    
T  19495237 aaaagtcaaatatttcgatttccaatgcattgattacacccatttttataaatac 19495291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 2769382 - 2769337
Alignment:
Q  191 ggtcttgttaacgagtacccccgggtactctttaagcattccaaaa 236  Q
    |||||||||||||||| |||| ||| ||||||||||||||| ||||    
T  2769382 ggtcttgttaacgagtgccccggggcactctttaagcattcaaaaa 2769337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 20142794 - 20142753
Alignment:
Q  12 aaagtgtcaaaagtagatggtataaaaacatgttgattgtca 53  Q
    ||||||||||||| | ||||||||||| ||||||||||||||    
T  20142794 aaagtgtcaaaagaaaatggtataaaagcatgttgattgtca 20142753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 4762314 - 4762374
Alignment:
Q  187 aaatggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaatta 246  Q
    |||||||||||||||||||| | ||||| | ||| ||||||||| ||||| ||||||||||    
T  4762314 aaatggtcttgttaacgagtgctcccggatcactgtttaagcatcccaaatttagtaatta 4762374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 2633064 - 2633118
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaata 308  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  2633064 aaaaagttaaatgtttcgatttccaatatattgattatacactttttcataaata 2633118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 290
Target Start/End: Original strand, 34445638 - 34445738
Alignment:
Q  191 ggtcttgttaacgagtacccccgg-gtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt 289  Q
    |||||||||||||||| ||||||| | |||||||||| |||||||||  || |||||       ||||||| |||| |||||||||||||||||||||||    
T  34445638 ggtcttgttaacgagtgcccccggagcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatgcattgatt 34445737  T
Q  290 a 290  Q
    |    
T  34445738 a 34445738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 17554891 - 17554945
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaata 308  Q
    ||||||||||||||||| |||| |||||||||||||||| | |||||||||||||    
T  17554891 aaaaagttaaatgtttcaatttacaatgcattgattatatattttttcataaata 17554945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 20259877 - 20259819
Alignment:
Q  1 ctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||||| ||||||||||||| | || |||||||||||||||||||||||||| |||||    
T  20259877 ctaagaaaccgaaagtgtcaacaataaatggtataaaaacatgttgattgtcagaacac 20259819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 320
Target Start/End: Original strand, 37037645 - 37037747
Alignment:
Q  219 tctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattataca-ctttttcataaatacatactatt 317  Q
    ||||||||||||  |||| |||||||||       ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||||| ||| ||||    
T  37037645 tctttaagcattttaaaaatagtaattatttttaaaaaaagttaaatgtttcaatttccaatacattgattacacatttttttcataaatatatattatt 37037744  T
Q  318 tat 320  Q
    |||    
T  37037745 tat 37037747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 309
Target Start/End: Original strand, 37705847 - 37705965
Alignment:
Q  192 gtcttgttaacgagtacccccgg-gtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta 290  Q
    ||||||||||||||| ||||||| | ||||||||||||||| ||||| ||||||||        |||| | |||||||| ||||| ||||||||| ||||    
T  37705847 gtcttgttaacgagtgcccccggagcactctttaagcattcgaaaatgagtaattattttttagaaaactcaaatgttttgattttcaatgcattaatta 37705946  T
Q  291 tacactttttcataaatac 309  Q
     ||  ||||||||||||||    
T  37705947 cacgttttttcataaatac 37705965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 28041199 - 28041148
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 60  Q
    |||||||||||||||| | ||||||||||||| |||||||||||| ||||||    
T  28041199 ccgaaagtgtcaaaagcaaatggtataaaaacctgttgattgtcagaacaca 28041148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 33744245 - 33744153
Alignment:
Q  217 actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatac 309  Q
    ||||||||||||||  ||||| ||||||||       ||||||| |||| ||||||||| |||||||||||||| | | ||||||||||||||    
T  33744245 actctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattgattacatattttttcataaatac 33744153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 9053854 - 9053912
Alignment:
Q  262 aaatgtttcgatttccaatgcattgattatacactttttcataaatacatactatttat 320  Q
    |||||||||||||| ||||||||| |||| | | |||||||||||||| ||||||||||    
T  9053854 aaatgtttcgattttcaatgcatttattacatattttttcataaatacttactatttat 9053912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 19035486 - 19035532
Alignment:
Q  13 aagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||| ||||||||||| |||||||||||||| |||||    
T  19035486 aagtgtcaaaagtaaatggtataaaagcatgttgattgtcagaacac 19035532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 21473042 - 21473088
Alignment:
Q  13 aagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||| | |||||||||||||||||||||||||| |||||    
T  21473042 aagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacac 21473088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 26687572 - 26687626
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaata 308  Q
    ||||||| |||| ||||||||| ||||||||| |||| |||||||||||||||||    
T  26687572 aaaaagtcaaatatttcgattttcaatgcattaattacacactttttcataaata 26687626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 29169865 - 29169815
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  29169865 ccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 29169815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 43831645 - 43831600
Alignment:
Q  12 aaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaac 57  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||||    
T  43831645 aaagtgtcacaagtcaatggtataaaaacatgttgattgtcaaaac 43831600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 45659719 - 45659670
Alignment:
Q  10 cgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  45659719 cgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 45659670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 35438102 - 35438050
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaa 306  Q
    |||||||||||  ||||||||||||||||||||| ||||||  ||||||||||    
T  35438102 aaaaagttaaacatttcgatttccaatgcattgaatatacatattttcataaa 35438050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 15549640 - 15549695
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatac 309  Q
    ||||||| |||| ||||||||| |||||||||||||| |||| |||| ||||||||    
T  15549640 aaaaagtaaaatatttcgattttcaatgcattgattacacacatttttataaatac 15549695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 7481447 - 7481377
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatacatactatttattgat 324  Q
    ||||||||||||  |||||||| ||||| |||||||| |||| ||||| ||| ||| ||||| ||||||||    
T  7481447 aaaaagttaaatacttcgattttcaatgtattgattacacacattttcttaagtacttactacttattgat 7481377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 14774143 - 14774189
Alignment:
Q  262 aaatgtttcgatttccaatgcattgattatacactttttcataaata 308  Q
    |||| ||||||||| ||||||||||| ||||||| ||||||||||||    
T  14774143 aaatatttcgattttcaatgcattgaatatacacattttcataaata 14774189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 4039675 - 4039639
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgatta 290  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  4039675 aaaaagtcaaatatttcgatttccaatgcattgatta 4039639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 15057870 - 15057826
Alignment:
Q  256 aaagttaaatgtttcgatttccaatgcattgattatacacttttt 300  Q
    |||| ||||||||||||||| |||||||| ||||||||| |||||    
T  15057870 aaagataaatgtttcgattttcaatgcatggattatacatttttt 15057826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 31807917 - 31807861
Alignment:
Q  191 ggtcttgttaacgagtacccccgg-gtactctttaagcattccaaaattagtaatta 246  Q
    |||||||||||||||| ||||||| | ||| ||||||||||| ||||| ||||||||    
T  31807917 ggtcttgttaacgagtgcccccggagcactatttaagcattctaaaataagtaatta 31807861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 39150551 - 39150607
Alignment:
Q  191 ggtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaatta 246  Q
    |||||||||||||||| ||||| ||| ||||||||||||| | ||| ||||||||||    
T  39150551 ggtcttgttaacgagtgcccccggggcactctttaagcatcctaaatttagtaatta 39150607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 48022490 - 48022434
Alignment:
Q  191 ggtcttgttaacgagtacccccg-ggtactctttaagcattccaaaattagtaatta 246  Q
    |||||||||||||||| |||| | |||||||||||||||| ||| | ||||||||||    
T  48022490 ggtcttgttaacgagtgcccctgtggtactctttaagcatcccatatttagtaatta 48022434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 40299689 - 40299742
Alignment:
Q  262 aaatgtttcgatttccaatgcattgattatacactttttcataaatacatacta 315  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||| |||||    
T  40299689 aaatgtttcgatttccaatgcattgattatacacattttaataaatacttacta 40299742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 27055945 - 27055997
Alignment:
Q  256 aaagttaaatgtttcgatttccaatgcattgattatacactttttcataaata 308  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  27055945 aaagttaaatgtttcgatttccaatgtattgattacacattttttcataaata 27055997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 290
Target Start/End: Complemental strand, 42760282 - 42760184
Alignment:
Q  192 gtcttgttaacgagtacccccgggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta 290  Q
    ||||||||||||||| |||| ||  ||||||||||||||||||||  || |||||       ||||| | ||||||||| |||||||||||||||||||    
T  42760282 gtcttgttaacgagttcccctggacactctttaagcattccaaaaggagaaattattccataaaaaaatcaaatgtttcaatttccaatgcattgatta 42760184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 500262 - 500312
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||| |||||    
T  500262 ccgaaaatgtcaaaagtaaatggtataaaagcatgttgattgtcagaacac 500312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 3188000 - 3188054
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||| ||||||| | ||||||||||| |||||||||||||| |||||    
T  3188000 gaagccgaaagtttcaaaagcaaatggtataaaagcatgttgattgtcagaacac 3188054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 38815325 - 38815379
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||| |||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  38815325 gaagcggaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 38815379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 9200007 - 9200051
Alignment:
Q  191 ggtcttgttaacgagtacccccgggtactctttaagcattccaaa 235  Q
    |||||||||||||||||||||| ||||||||||||| || |||||    
T  9200007 ggtcttgttaacgagtacccccaggtactctttaaggatcccaaa 9200051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 25021890 - 25021835
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 60  Q
    |||||| ||| ||||||||| | |||||||||||||||||||||||| | ||||||    
T  25021890 gaagccaaaaatgtcaaaagaaaatggtataaaaacatgttgattgtgagaacaca 25021835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 22209439 - 22209505
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatacatactatttat 320  Q
    |||||||||||| ||| |||||||||  ||||||||| | |  ||||||||||||| ||||||||||    
T  22209439 aaaaagttaaatattttgatttccaagacattgattacatatattttcataaatacttactatttat 22209505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 36004164 - 36004201
Alignment:
Q  16 tgtcaaaagtagatggtataaaaacatgttgattgtca 53  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  36004164 tgtcaaatgtaaatggtataaaaacatgttgattgtca 36004201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 16723332 - 16723276
Alignment:
Q  191 ggtcttgttaacgagt-acccccgggtactctttaagcattccaaaattagtaatta 246  Q
    |||||||||||||||| ||||| ||| ||||||||||||| ||||| || |||||||    
T  16723332 ggtcttgttaacgagtgaccccagggcactctttaagcatcccaaattttgtaatta 16723276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 12606060 - 12605995
Alignment:
Q  255 aaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatacatactatttat 320  Q
    |||||| |||| ||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||    
T  12606060 aaaagtaaaatatttggattttcaatgcattgattatacgctttttcataaatacttactatttat 12605995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 13063954 - 13063888
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatacatactatttat 320  Q
    ||||||| |||||||  |||||||||| ||||||||| |||||||||||||||||  ||||||||||    
T  13063954 aaaaagtcaaatgttgtgatttccaatacattgattacacactttttcataaatagttactatttat 13063888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 13070578 - 13070512
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatacatactatttat 320  Q
    |||||||||||||||  |||||||||| ||||||||| ||| |||||||||||||  ||||||||||    
T  13070578 aaaaagttaaatgttgtgatttccaatacattgattacacattttttcataaatagttactatttat 13070512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 33220787 - 33220733
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||    
T  33220787 gaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcaacacac 33220733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 17249381 - 17249326
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 60  Q
    |||||| ||||||||||||| | ||||||||||| |||||||||||||| ||||||    
T  17249381 gaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacaca 17249326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 13070715 - 13070649
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatacatactatttat 320  Q
    |||||||||||||||  |||||||||| ||||||||| | | |||||||||||||  ||||||||||    
T  13070715 aaaaagttaaatgttgtgatttccaatacattgattacatattttttcataaatagttactatttat 13070649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 34304527 - 34304581
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||| ||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  34304527 gaagcccaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacac 34304581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 34554353 - 34554299
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||||||| |||||||||||| ||||||||||||||| |||||| ||| |||||    
T  34554353 gaagccgaatgtgtcaaaagtaaatggtataaaaacatcttgattatcagaacac 34554299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 45757 - 45699
Alignment:
Q  1 ctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||||| |||||||||||||||  | |||| |||||| |||||||||||||| |||||    
T  45757 ctaagaaaccgaaagtgtcaaaaacaaatggaataaaagcatgttgattgtcagaacac 45699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 4165994 - 4165944
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||||| | ||| ||||||| |||||||||||||| |||||    
T  4165994 ccgaaagtgtcaaaagcaaatgatataaaagcatgttgattgtcagaacac 4165944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 12383091 - 12383051
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattataca 294  Q
    |||||||||||| ||| ||||||| ||||||||||||||||    
T  12383091 aaaaagttaaatattttgatttccgatgcattgattataca 12383051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 33285 - 33335
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| |||||    
T  33285 ccgaaaatgtcaaaagtaaatggtataaaaacatgttgattgtcagaacac 33335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 309
Target Start/End: Complemental strand, 53737930 - 53737812
Alignment:
Q  192 gtcttgttaacgagtaccccc-gggtactctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatta 290  Q
    |||||| |||||||| ||||| ||| ||||||||||| ||||||||| || |||||       ||||| | |||| ||||||||||||||||||||| ||    
T  53737930 gtcttgctaacgagtgcccccagggcactctttaagcgttccaaaataagaaattattctttaaaaaattcaaatatttcgatttccaatgcattgaata 53737831  T
Q  291 tacactttttcataaatac 309  Q
     |||| |||||| ||||||    
T  53737830 cacacgttttcaaaaatac 53737812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 319
Target Start/End: Original strand, 8297840 - 8297970
Alignment:
Q  191 ggtcttgttaacgagtacccccgggt-actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgatt 289  Q
    |||||||||||||||| ||||||||  ||||||||||||| ||||| ||||||||||       |||| || || |||| | |||||||||||||| | |    
T  8297840 ggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgcattcaat 8297939  T
Q  290 atacactttttca-taaatacatactattta 319  Q
    | ||| ||||||| |||| || |||||||||    
T  8297940 acacaatttttcattaaaaacttactattta 8297970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 41370241 - 41370178
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaatacatactatt 317  Q
    |||||||||||| |||| |||| |||||||||||||| |||  |||||||||| || |||||||    
T  41370241 aaaaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaaacttactatt 41370178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 48656990 - 48656931
Alignment:
Q  1 ctaagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacaca 60  Q
    |||||||| ||||||||||||||  | ||||||||||||||| ||||||| || ||||||    
T  48656990 ctaagaagtcgaaagtgtcaaaaacaaatggtataaaaacattttgattgacataacaca 48656931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 23230308 - 23230270
Alignment:
Q  254 aaaaagttaaatgtttcgatttccaatgcattgattata 292  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  23230308 aaaaagttaaatgtttcaattttcaatgcattgattata 23230270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 55933538 - 55933492
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgt 51  Q
    |||| ||||||||||||||| | ||||||||||| ||||||||||||    
T  55933538 gaagtcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 55933492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 30940809 - 30940761
Alignment:
Q  10 cgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||||||||||||| | ||||||||||| |||||||||||||| |||||    
T  30940809 cgaaagtgtcaaaagca-atggtataaaagcatgttgattgtcagaacac 30940761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 31847118 - 31847171
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaaca 58  Q
    |||||| ||||||||||||| | |||||| ||||||||||||| ||||| ||||    
T  31847118 gaagccaaaagtgtcaaaagcaaatggtaaaaaaacatgttgactgtcagaaca 31847171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 3330027 - 3330075
Alignment:
Q  5 gaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca 53  Q
    |||||| ||||||||||||| | || |||||||| ||||||||||||||    
T  3330027 gaagccaaaagtgtcaaaagcaaatagtataaaagcatgttgattgtca 3330075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 7536621 - 7536593
Alignment:
Q  31 gtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||||||||||||||||||    
T  7536621 gtataaaaacatgttgattgtcaaaacac 7536593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 306
Target Start/End: Complemental strand, 12618804 - 12618715
Alignment:
Q  217 actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaa 306  Q
    ||||||||||||||||||| |||| |||||       ||||||| |||||||   | || ||||||||||||||||||  ||||||||||    
T  12618804 actctttaagcattccaaatttagaaattatttttttaaaaagtcaaatgttataaatttcaatgcattgattatacaaattttcataaa 12618715  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 50483268 - 50483224
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca 53  Q
    ||||||||||| |||| | ||||||||||| ||||||||||||||    
T  50483268 ccgaaagtgtcgaaagcaaatggtataaaatcatgttgattgtca 50483224  T

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Target: scaffold0291 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 11774 - 11683
Alignment:
Q  217 actctttaagcattccaaaattagtaattannnnnnnaaaaagttaaatgtttcgatttccaatgcattgattatacactttttcataaata 308  Q
    |||||||||||||| |||||| || |||||        |||||| ||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  11774 actctttaagcatttcaaaataagcaattaatttttagaaaagtcaaatgtttcgatttcaaatgctttgattacacattttttcataaata 11683  T

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Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 49439 - 49496
Alignment:
Q  2 taagaagccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    ||||||| ||||||||||||||| | ||||||||||| || ||||||||||| |||||    
T  49439 taagaagtcgaaagtgtcaaaagcaaatggtataaaagcacgttgattgtcagaacac 49496  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 103141 - 103185
Alignment:
Q  9 ccgaaagtgtcaaaagtagatggtataaaaacatgttgattgtca 53  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||    
T  103141 ccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 103185  T

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Target: scaffold0490 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 6371 - 6419
Alignment:
Q  11 gaaagtgtcaaaagtagatggtataaaaacatgttgattgtcaaaacac 59  Q
    |||||||||||||| | |||||||| || |||||||||||||| |||||    
T  6371 gaaagtgtcaaaagcaaatggtatagaagcatgttgattgtcagaacac 6419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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