View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_39 (Length: 334)
Name: NF6210_low_39
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 3 - 323
Target Start/End: Complemental strand, 42535502 - 42535182
Alignment:
| Q |
3 |
aatgtagacaattgaattgtttgagaactttgccatcctcaatggatataatcttgactggaatatggtcacttgttcttttgaagatgaataacatgat |
102 |
Q |
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| T |
42535502 |
aatgtagacaattgaattgtttgagaactttgccatcctcaatggatataatcttgactggaatatggtcacttgttcttttgaagatgaataacatgat |
42535403 |
T |
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| Q |
103 |
gccagaagtgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaagatcaaaaaccttgaatatactatcttgcgga |
202 |
Q |
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| T |
42535402 |
gccagaactgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaagatcaaaaaccttgaatatactatcttgcgca |
42535303 |
T |
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| Q |
203 |
gagtaggttaggaccttggcattaacatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgt |
302 |
Q |
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| T |
42535302 |
gagtaggttaggaccttggcattaacatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgt |
42535203 |
T |
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| Q |
303 |
cttcaatgcgtgttgatctgt |
323 |
Q |
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| T |
42535202 |
cttcaatgcgtgttgatctgt |
42535182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 42529782 - 42529460
Alignment:
| Q |
1 |
ccaatgtagacaattgaattgtttgagaactttgccatcctcaatggatataatcttgactggaatatggtcacttgttcttttgaagatgaataacatg |
100 |
Q |
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| T |
42529782 |
ccaatgtagataactgaattctttgagaactaagccatcctcaatggatataatcttgattggaatatgatcacttcttctttggaagatgaataacatg |
42529683 |
T |
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| Q |
101 |
atgccagaagtgatgttgatccaatcaacattgctaaatgaaaacaagtatagaaaagtgtagtttttaagatcaaaaaccttgaatatactatcttgcg |
200 |
Q |
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| T |
42529682 |
atgccagaactgatgttgatccgttgaacattgctaaatgaaaacgagtatagaaaagtgtagtttttaaggtcaaaaaccttgaacatactatcttgcg |
42529583 |
T |
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| Q |
201 |
gagagtaggttaggaccttggcattaacatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttat |
300 |
Q |
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| T |
42529582 |
cagagtaggttaagaccttgacattaacatcatcaaattttacaacaaaagaatctgactgaaaaagatcaaaaccggcatccggcttggccctccttgt |
42529483 |
T |
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| Q |
301 |
gtcttcaatgcgtgttgatctgt |
323 |
Q |
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| T |
42529482 |
gtattcaatacttgttgatctgt |
42529460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 27824691 - 27824597
Alignment:
| Q |
13 |
attgaattgtttgagaactttgccatcctcaatggatataatcttgactggaatatggtcacttgttcttttgaagatgaataacatgatgccag |
107 |
Q |
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| T |
27824691 |
attgaatgctttgagaactgtgccatcctcaatggatataattttcagtggaatatgaccacttgctctattgaatattaataacatgatgccag |
27824597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 27822207 - 27822153
Alignment:
| Q |
191 |
ctatcttgcggagagtaggttaggaccttggcattaacatcatcaaatttcacaa |
245 |
Q |
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||||| |||| |||||| ||||||||||| ||||||||||||||||||| ||||| |
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| T |
27822207 |
ctatcctgcgcagagtatgttaggacctttgcattaacatcatcaaattccacaa |
27822153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 27822138 - 27822084
Alignment:
| Q |
248 |
aaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgt |
302 |
Q |
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|||||||| ||||| |||||| |||||| |||||||||||||||||| |||||| |
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| T |
27822138 |
aaagactcggactggaaaagaggaaaaccagcatccggcttggccctctttatgt |
27822084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 27822347 - 27822302
Alignment:
| Q |
147 |
agtatagaaaagtgtagtttttaagatcaaaaaccttgaatatact |
192 |
Q |
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| T |
27822347 |
agtatagcaaagtgtagtttttaagatcgaagaccttgtatatact |
27822302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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