View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_41 (Length: 324)
Name: NF6210_low_41
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 52829113 - 52829418
Alignment:
| Q |
1 |
tcgcactatgtaggaacacaaacctcctatgccatcaattattctaaattaaaccaccatttctaatgtttcatttacctatatctatagcttgatatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52829113 |
tcgcactatgtaggaacacaaacctcctatgccatcaattattctaaattaaaccaccatttctaatgtttcatttacctatatctttagcttgatatta |
52829212 |
T |
|
| Q |
101 |
ctcctcggaaaaacaaataaatgagagtggaacgatgaggagaaagggatagaaactaaagctagtccatggtgctcttctcttcctgaggtttttcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52829213 |
ctcctcggaaaaacaaataaatgagagtggaacgatgaggagaaagggatagaaactaaagctagtccatggtgctcttctcttcctgaggtttttcatg |
52829312 |
T |
|
| Q |
201 |
ttcacctttgtaaacagcaaaataattgtccaattcaagctgctccagtatttttggtgtcatccacaggtaggaggcgtggccttctataactcgggtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| |
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| T |
52829313 |
ttcacctttgtaaacagcaaaataattgtccaattcaagctgctccagtatttttggtgtcatccacaagtaggaagagtggccttctataactcgggtc |
52829412 |
T |
|
| Q |
301 |
acatca |
306 |
Q |
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|||||| |
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| T |
52829413 |
acatca |
52829418 |
T |
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