View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_44 (Length: 320)
Name: NF6210_low_44
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 36150336 - 36150526
Alignment:
| Q |
19 |
aaagttaaccacaatctcagtaaaaatattaaccacagtcaaaaacaagttcttggcannnnnnngttagaata---gaaggtgggtgagcttttgaaat |
115 |
Q |
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| T |
36150336 |
aaagttaaccacaatctcagtaaaaatattaaccacggtcaaaaacaatttcttggcatttttt-gttagaaaatgagaaggtggataagcttttgaaat |
36150434 |
T |
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| Q |
116 |
ggattgaaaaggagaaaatatttgggagaataacaatttacttgcttaactagattggtttggtatctactgtttgatttgatttataataa |
207 |
Q |
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| T |
36150435 |
agattgaaaaggagaaaatatttgggagaataacaatttacttgcttaacaagattggtttggtatctactgtttgatttgatttataataa |
36150526 |
T |
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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 36150641 - 36150737
Alignment:
| Q |
200 |
tataataaatgactatttctttcatgtttataagtttcaactttcaagtagagttctatacatcaatcagaaaaattgtaccct-aacattaacttt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
36150641 |
tataataaatgactatttctttcatgtttataagtttcaactttcaagtagagttctatacatcaatcagaaaaattgcaccctaaacattaacttt |
36150737 |
T |
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