View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_48 (Length: 301)
Name: NF6210_low_48
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 47035651 - 47035926
Alignment:
| Q |
9 |
gacatcatcaatgttttcaaattcctttatttgagatgagttgacatactaccgagaaaaacacattatttcacccgaggagcatgaaggcgagtgaaac |
108 |
Q |
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| T |
47035651 |
gacagcatcaatgttttcaaattcctttatttgagatgagttgacatactaccgagaaaaacacattatttcacccgaggagcatgaaggcgagtgaaac |
47035750 |
T |
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| Q |
109 |
cttcaacacgaacctccttattcttccattgccacaaaaagtgacaagctatagtacattcaccagaccacaaaattcacatattaatctcattgcgttt |
208 |
Q |
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| T |
47035751 |
cttcaacacaaacctccttattcttccattgccacaaaaagtgacaagctatggtacattcaccagaccacaaaattcacatattaatctcattgcgttt |
47035850 |
T |
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| Q |
209 |
gcttaaacataactctaaccaatccttaaaatcacatttcaaagaaagcttcacgatctttccacggagccaaatg |
284 |
Q |
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| T |
47035851 |
gctcaaacataactctaaccaatccttaaaatcacatttcaaagaaagcttcacgatctttccacggagccaaatg |
47035926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 283
Target Start/End: Complemental strand, 36571801 - 36571606
Alignment:
| Q |
90 |
gcatgaaggcgagtgaaaccttcaacacgaacctccttattcttccattgccacaaaaagtgacaagctatagtacattcaccagaccac---aaaattc |
186 |
Q |
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|||||| | |||||||||||||||||| |||||| ||||||||| ||||| ||| ||||||||| ||||| ||| ||||||||||| | |||| |
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| T |
36571801 |
gcatgaggacgagtgaaaccttcaacatgaaccttcttattctttcattgttgcaatgagtgacaagttatagcccatacaccagaccacacaataattt |
36571702 |
T |
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| Q |
187 |
acatattaatctcattgcgtttgcttaaacataactctaaccaatccttaaaatcacatttcaaagaaagcttcacgatctttccacggagccaaat |
283 |
Q |
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| T |
36571701 |
tcatactaacctcattcattttgttcaaatttaactcgaaccaatccttaaaatcac-ttctaaagaaagctttgcgatccttccatggaaccaaat |
36571606 |
T |
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