View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_49 (Length: 295)
Name: NF6210_low_49
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 30678118 - 30678382
Alignment:
| Q |
20 |
aacatcgcaatgcttgtggacaattatcctcctccatannnnnnnnnnnnngccctcccatcgaccgcgtactccaatgactacatagaatctattctaa |
119 |
Q |
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| T |
30678118 |
aacatcgcaatgcttgtggacaattatcctcctgcatatttttttatttttgccctcccatcgaccgcgtactccaatgactacatagaatctattctga |
30678217 |
T |
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| Q |
120 |
accggccaaaaggccaatcctattacgacatgtggacaaaacacttcagaccaaggacgcggtgtcttgcgtgagcacatcaataatagtgaacaccacc |
219 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30678218 |
accggccaaaaggccaatcctattacgacacgtggacaaaacacttcagaccaaggacgcggtgtcttgcgtgagcacatcaataatagtgaacaccacc |
30678317 |
T |
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| Q |
220 |
tcactgtatcatgttcccgcgcttcctacaccgtacacgtggcctccaacggctgcctgatgatg |
284 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30678318 |
tcactgtagcatgttcccgcgcttcctacaccatacacgtggcctccaacggctgcctgatgatg |
30678382 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 282
Target Start/End: Complemental strand, 33189659 - 33189628
Alignment:
| Q |
251 |
cgtacacgtggcctccaacggctgcctgatga |
282 |
Q |
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| T |
33189659 |
cgtacacgtggcctccaacggctgcctgatga |
33189628 |
T |
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