View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_60 (Length: 253)
Name: NF6210_low_60
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_60 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 134 - 253
Target Start/End: Complemental strand, 5789946 - 5789827
Alignment:
| Q |
134 |
aacaaccaagtctatatttttgttcatatttgtgtggctatagttggatttttcttggtaacattatcaactatggttatcaaactttgaacaagaaaca |
233 |
Q |
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| T |
5789946 |
aacaaccaagtctatatttttgttcatatttgtgtggctatagttggatttttcttggtaacattatcaactatggttatcaaactatgaacaagaaaca |
5789847 |
T |
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| Q |
234 |
aatgtagattactacttctt |
253 |
Q |
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|||||||||||||||||||| |
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| T |
5789846 |
aatgtagattactacttctt |
5789827 |
T |
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Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 5790074 - 5789975
Alignment:
| Q |
14 |
agaggaaaagacagaaagtgcaacgtcagagtttaacagtagggttcccctttggtttgtggttttggacaagttca-ggattccctcttctcatccaca |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5790074 |
agaggaaaagacagaaagtgcaacgtcagagtttaacagtagggttcccctttggtttgtggttttggacaagttcagggattccctcttctcatccaca |
5789975 |
T |
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