View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_66 (Length: 249)
Name: NF6210_low_66
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_66 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 9382263 - 9382446
Alignment:
| Q |
58 |
aaagatacgacttttacataaaaagaaagaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattt |
157 |
Q |
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| T |
9382263 |
aaagatgcgacttttacataaaaagaaggaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattt |
9382362 |
T |
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| Q |
158 |
tgatcctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
241 |
Q |
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| T |
9382363 |
tgatcctcagcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
9382446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 9399737 - 9399915
Alignment:
| Q |
62 |
atacgacttttacataaaaagaaagaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgat |
161 |
Q |
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| T |
9399737 |
atacgacttgtacataaaa-gaaagaagtagagataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgat |
9399835 |
T |
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| Q |
162 |
cctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
241 |
Q |
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| T |
9399836 |
cctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
9399915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9382171 - 9382204
Alignment:
| Q |
1 |
tgataacccacttgggttgatatgatgatattag |
34 |
Q |
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| T |
9382171 |
tgataacccacttgggttgatatgatgatattag |
9382204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 23243915 - 23243822
Alignment:
| Q |
105 |
ttaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcggcacaatcaagcaatatatcaagaaagtctct |
198 |
Q |
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| T |
23243915 |
ttaccataatcaaggccttaacgtgaaccctttgaattttcatctcagagctttcatcctcgacataatcaagtaggatatcaagaaagtctct |
23243822 |
T |
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