View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_low_69 (Length: 248)

Name: NF6210_low_69
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_low_69
NF6210_low_69
[»] chr2 (3 HSPs)
chr2 (12-231)||(39090843-39091061)
chr2 (56-101)||(39068709-39068754)
chr2 (44-109)||(44488003-44488068)
[»] chr3 (2 HSPs)
chr3 (57-99)||(47039443-47039485)
chr3 (60-101)||(52119395-52119436)
[»] chr1 (4 HSPs)
chr1 (56-101)||(19262908-19262953)
chr1 (56-99)||(5031157-5031200)
chr1 (60-99)||(12500942-12500981)
chr1 (56-101)||(26329123-26329168)
[»] chr5 (4 HSPs)
chr5 (51-99)||(16752505-16752553)
chr5 (61-99)||(29554882-29554920)
chr5 (60-101)||(22901978-22902019)
chr5 (63-99)||(6237722-6237758)
[»] chr7 (3 HSPs)
chr7 (56-99)||(42336085-42336128)
chr7 (56-101)||(39926539-39926584)
chr7 (56-101)||(45200208-45200253)
[»] chr8 (6 HSPs)
chr8 (60-101)||(9635054-9635095)
chr8 (60-101)||(20275190-20275231)
chr8 (60-101)||(21061817-21061858)
chr8 (52-101)||(23159452-23159501)
chr8 (52-84)||(33763826-33763858)
chr8 (64-96)||(35700401-35700433)
[»] chr4 (2 HSPs)
chr4 (52-84)||(29910472-29910504)
chr4 (52-84)||(49952689-49952721)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 39090843 - 39091061
Alignment:
Q  12 ttctactttctgcacctaagaatgtgaatgatagtttacttcaattgataaggacaatgcataatacatgcaaaattcggggttcgaaccacatccacnn 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||||| |||||||      
T  39090843 ttctactttctacacctaagaatgtgaatgatagtttacttcaattgataaagacaatgcataatatatgcaaagttcgggattcgaaccccatccacaa 39090942  T
Q  112 nnnnnncatgttaatgatcaattatacaaaatgagaataacattattttgaacaaactcaaaggttagacggtaaatatggaaagaatacttcctcaaat 211  Q
          |||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39090943 aaaaa-catgttaatgatcaattatgaaaaacgagaataacattattttgaacaaactcaaaggttagacagtaaatatggaaagaatacttcctcaaat 39091041  T
Q  212 gatcatatatggctagaatc 231  Q
    |||||| |||||||||||||    
T  39091042 gatcatgtatggctagaatc 39091061  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 39068754 - 39068709
Alignment:
Q  56 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 101  Q
    |||||||||||||||||||||| |||||| || ||||||| |||||    
T  39068754 ttgataaggacaatgcataatatatgcaagatccggggtttgaacc 39068709  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 44488068 - 44488003
Alignment:
Q  44 agtttacttcaattgataaggacaatgcataatacatgcaaaattcggggttcgaaccacatccac 109  Q
    |||||| |||| ||| |||||||||||||||||| ||| ||  ||||| |||| ||||||||||||    
T  44488068 agtttagttcagttggtaaggacaatgcataatatatgtaaggttcggagttcaaaccacatccac 44488003  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 47039443 - 47039485
Alignment:
Q  57 tgataaggacaatgcataatacatgcaaaattcggggttcgaa 99  Q
    ||||||||||||||||||||| ||||||| |||||||||||||    
T  47039443 tgataaggacaatgcataatatatgcaaagttcggggttcgaa 47039485  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 52119395 - 52119436
Alignment:
Q  60 taaggacaatgcataatacatgcaaaattcggggttcgaacc 101  Q
    |||||||||||||||||| ||||||  |||||||||||||||    
T  52119395 taaggacaatgcataatatatgcaaggttcggggttcgaacc 52119436  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 19262953 - 19262908
Alignment:
Q  56 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 101  Q
    |||||||||||||||||||| | ||||||| |||||||||||||||    
T  19262953 ttgataaggacaatgcataacatatgcaaagttcggggttcgaacc 19262908  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 5031200 - 5031157
Alignment:
Q  56 ttgataaggacaatgcataatacatgcaaaattcggggttcgaa 99  Q
    |||||||||||||||||||||| || |||| |||||||||||||    
T  5031200 ttgataaggacaatgcataatatatacaaagttcggggttcgaa 5031157  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 12500942 - 12500981
Alignment:
Q  60 taaggacaatgcataatacatgcaaaattcggggttcgaa 99  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  12500942 taaggacaatgcataatatatgcaaagttcggggttcgaa 12500981  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 26329168 - 26329123
Alignment:
Q  56 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 101  Q
    |||||||| ||||||||||||||||||||  ||||| |||||||||    
T  26329168 ttgataagaacaatgcataatacatgcaaggttcggagttcgaacc 26329123  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 16752553 - 16752505
Alignment:
Q  51 ttcaattgataaggacaatgcataatacatgcaaaattcggggttcgaa 99  Q
    |||| ||| |||||||||||||||||| |||||| ||||||||||||||    
T  16752553 ttcagttggtaaggacaatgcataatatatgcaagattcggggttcgaa 16752505  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 29554882 - 29554920
Alignment:
Q  61 aaggacaatgcataatacatgcaaaattcggggttcgaa 99  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  29554882 aaggacaatgcataatacatgcaaggttcggggttcgaa 29554920  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 22901978 - 22902019
Alignment:
Q  60 taaggacaatgcataatacatgcaaaattcggggttcgaacc 101  Q
    |||||||||||||||||| ||||||| |||||| ||||||||    
T  22901978 taaggacaatgcataatatatgcaaagttcgggattcgaacc 22902019  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 6237758 - 6237722
Alignment:
Q  63 ggacaatgcataatacatgcaaaattcggggttcgaa 99  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  6237758 ggacaatgcataatatatgcaagattcggggttcgaa 6237722  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 42336085 - 42336128
Alignment:
Q  56 ttgataaggacaatgcataatacatgcaaaattcggggttcgaa 99  Q
    |||||||||||||||||||||||||||||  | |||||||||||    
T  42336085 ttgataaggacaatgcataatacatgcaaggtccggggttcgaa 42336128  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 39926584 - 39926539
Alignment:
Q  56 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 101  Q
    |||||||||||||||||||||| ||||||  |||||||||| ||||    
T  39926584 ttgataaggacaatgcataatatatgcaatgttcggggttcaaacc 39926539  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 45200208 - 45200253
Alignment:
Q  56 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 101  Q
    |||||| |||||||||||||||||||||||||  || |||||||||    
T  45200208 ttgatatggacaatgcataatacatgcaaaatctggagttcgaacc 45200253  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 9635095 - 9635054
Alignment:
Q  60 taaggacaatgcataatacatgcaaaattcggggttcgaacc 101  Q
    |||||| ||||||||||||||||||  |||||||||||||||    
T  9635095 taaggataatgcataatacatgcaaggttcggggttcgaacc 9635054  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 20275231 - 20275190
Alignment:
Q  60 taaggacaatgcataatacatgcaaaattcggggttcgaacc 101  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  20275231 taaggacaatgcataatacatgcaaggttcggggttcaaacc 20275190  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 21061858 - 21061817
Alignment:
Q  60 taaggacaatgcataatacatgcaaaattcggggttcgaacc 101  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  21061858 taaggacaatgcataatacatgcaaggttcggggttcaaacc 21061817  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 23159452 - 23159501
Alignment:
Q  52 tcaattgataaggacaatgcataatacatgcaaaattcggggttcgaacc 101  Q
    |||||| ||| ||||||||||||||| |||||| ||||||||||| ||||    
T  23159452 tcaattcatatggacaatgcataatatatgcaagattcggggttcaaacc 23159501  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 33763826 - 33763858
Alignment:
Q  52 tcaattgataaggacaatgcataatacatgcaa 84  Q
    |||||||||||||||||||||||||| ||||||    
T  33763826 tcaattgataaggacaatgcataatatatgcaa 33763858  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 35700433 - 35700401
Alignment:
Q  64 gacaatgcataatacatgcaaaattcggggttc 96  Q
    |||||||||||||| ||||||||||||||||||    
T  35700433 gacaatgcataatatatgcaaaattcggggttc 35700401  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 29910472 - 29910504
Alignment:
Q  52 tcaattgataaggacaatgcataatacatgcaa 84  Q
    |||||||||||||||||||||||||| ||||||    
T  29910472 tcaattgataaggacaatgcataatatatgcaa 29910504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 49952721 - 49952689
Alignment:
Q  52 tcaattgataaggacaatgcataatacatgcaa 84  Q
    |||||||||||||||||||||||||| ||||||    
T  49952721 tcaattgataaggacaatgcataatatatgcaa 49952689  T

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