View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_73 (Length: 244)
Name: NF6210_low_73
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 12367446 - 12367653
Alignment:
| Q |
16 |
cacagatactatattggaaatttttcgctctaaacggcggtagaaatttcgtacctataacatgataaccgaaatatttatgtatattaaatattagaaa |
115 |
Q |
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| T |
12367446 |
cacagatactatattggaaatttgtcgctctaaacggcggtagaaatttcgtacctctaacatgataacccaaatatttatgtatattaactattagaaa |
12367545 |
T |
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| Q |
116 |
tagttgaaatagatctac-cnnnnnnnngaaatagttgaaatagtaacagccatataaatagagatagaaaatgaaaactttgtctctaatttcatcgca |
214 |
Q |
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| T |
12367546 |
tacttgaaatagatctacaaaaaaaaaaaaaatagttgaaatagtaacagccatataaatagagatagaaaatgaaaac--tgtctctaatttcatcgca |
12367643 |
T |
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| Q |
215 |
acgtattaga |
224 |
Q |
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| T |
12367644 |
aagtattaga |
12367653 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 33731655 - 33731695
Alignment:
| Q |
46 |
taaacggcggtagaaatttcgtacctataacatgataaccg |
86 |
Q |
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| T |
33731655 |
taaacggcggttgaaacttcgtaccaataacatgataaccg |
33731695 |
T |
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