View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_low_78 (Length: 242)

Name: NF6210_low_78
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_low_78
NF6210_low_78
[»] chr6 (15 HSPs)
chr6 (31-227)||(5380305-5380500)
chr6 (117-207)||(5092959-5093049)
chr6 (44-221)||(5422154-5422331)
chr6 (51-227)||(5174101-5174277)
chr6 (105-191)||(5358140-5358226)
chr6 (130-195)||(5070419-5070484)
chr6 (120-197)||(5429626-5429703)
chr6 (91-227)||(5107750-5107886)
chr6 (117-185)||(5149714-5149782)
chr6 (159-227)||(5692893-5692961)
chr6 (117-207)||(5160488-5160578)
chr6 (149-227)||(5275945-5276023)
chr6 (106-195)||(5366519-5366608)
chr6 (91-178)||(5444102-5444189)
chr6 (140-188)||(5105505-5105553)
[»] chr4 (1 HSPs)
chr4 (116-196)||(25567064-25567144)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 5380305 - 5380500
Alignment:
Q  31 tttcttggatgaagattcgattcaaagaggagatcatatttcaacattgttacatcaagaaattgaacaatgtaaaatttctattgttgttttttcaaga 130  Q
    |||| |||||||||||||  |||||||||||||||||||||||||||||||||  |||||||||||||| | ||||||||||||| ||||||||||||||    
T  5380305 tttcatggatgaagattcacttcaaagaggagatcatatttcaacattgttaccgcaagaaattgaacattctaaaatttctattattgttttttcaaga 5380404  T
Q  131 aattatgcagaatcacaatggtgtctcgatgagttggtgaagataatggagtgtcacagaaccatagcacagatagtgctaccggtgttctatgatg 227  Q
    ||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5380405 aattatgcagattcacgatggtgtcttgatgagttggtgaagataat-gagtgtcacagaaccatagcacagatagtgctaccggtgttctatgatg 5380500  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 5092959 - 5093049
Alignment:
Q  117 ttgttttttcaagaaattatgcagaatcacaatggtgtctcgatgagttggtgaagataatggagtgtcacagaaccatagcacagatagt 207  Q
    ||||||||||||||||||||||||| || | ||||||||| |||||||| || |||||||||||||||||  |||||||||  ||||||||    
T  5092959 ttgttttttcaagaaattatgcagattcgcgatggtgtctagatgagttagtaaagataatggagtgtcagcgaaccatagggcagatagt 5093049  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 5422154 - 5422331
Alignment:
Q  44 gattcgattcaaagaggagatcatatttcaacattgttacatcaagaaattgaacaatgtaaaatttctattgttgttttttcaagaaattatgcagaat 143  Q
    |||||| |||||||||||||||| ||||||||||   | |  | || ||||||||| | |  ||| |||||  | ||||| |||| |||||| || || |    
T  5422154 gattcgcttcaaagaggagatcacatttcaacatcactcctacgagcaattgaacagtctcgaatgtctatcatagttttctcaacaaattacgcggatt 5422253  T
Q  144 cacaatggtgtctcgatgagttggtgaagataatggagtgtcacagaaccatagcacagatagtgctaccggtgttct 221  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||||||||||| | ||| || || || ||||||||||    
T  5422254 cacaatggtgtcttgatgagttgttgaaaataatggagtgtcacagaaccattggacaaattgttctgccggtgttct 5422331  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 5174101 - 5174277
Alignment:
Q  51 ttcaaagaggagatcatatttcaacattgttacatcaagaaattgaacaatgtaaaatttctattgttgttttttcaagaaattatgcagaatcacaatg 150  Q
    |||||||||||||||| ||||||| ||   |||  |||| ||||||| | | | |||||||| || |  |||| |||| ||| |||||||| ||||  ||    
T  5174101 ttcaaagaggagatcacatttcaaaatcactactacaagcaattgaagagtctcaaatttctgttatcattttctcaaaaaactatgcagattcacggtg 5174200  T
Q  151 gtgtctcgatgagttggtgaagataatggagtgtcacagaaccatagcacagatagtgctaccggtgttctatgatg 227  Q
    |||| | |||||||||||||| |||||| | |||| |||||| ||||  ||||||||| | ||||||||||||||||    
T  5174201 gtgtttggatgagttggtgaaaataatgaaatgtcgcagaactatagggcagatagtgttgccggtgttctatgatg 5174277  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 5358226 - 5358140
Alignment:
Q  105 aaatttctattgttgttttttcaagaaattatgcagaatcacaatggtgtctcgatgagttggtgaagataatggagtgtcacagaa 191  Q
    |||||||| || | ||||| |||| ||||||||||||||| ||||||||||| || ||||||||| |||||||| |||||| |||||    
T  5358226 aaatttctgttatcgttttctcaacaaattatgcagaatcgcaatggtgtcttgaagagttggtggagataatgaagtgtcgcagaa 5358140  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 5070484 - 5070419
Alignment:
Q  130 aaattatgcagaatcacaatggtgtctcgatgagttggtgaagataatggagtgtcacagaaccat 195  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||| | ||||||||    
T  5070484 aaattatgcggaatcacgatggtgtcttgatgagttggtgaagataatggaatgtaatagaaccat 5070419  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 5429626 - 5429703
Alignment:
Q  120 ttttttcaagaaattatgcagaatcacaatggtgtctcgatgagttggtgaagataatggagtgtcacagaaccatag 197  Q
    ||||||||| |||||| || ||||| | ||||||||| || |||||||||||||||||||||||||| ||||| ||||    
T  5429626 ttttttcaacaaattacgcggaatcgcgatggtgtcttgaggagttggtgaagataatggagtgtcagagaactatag 5429703  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 5107886 - 5107750
Alignment:
Q  91 aattgaacaatgtaaaatttctattgttgttttttcaagaaattatgcagaatcacaatggtgtctcgatgagttggtgaagataatggagtgtcacaga 190  Q
    ||||||| ||| | ||||||||||| |  |||| |||| |||||||||  |||| |  ||||||||  |||||||| ||| |||||||||||||| ||||    
T  5107886 aattgaagaatctgaaatttctattatcattttctcaaaaaattatgcgaaatcgcgttggtgtctaaatgagttgttgacgataatggagtgtcgcaga 5107787  T
Q  191 accatagcacagatagtgctaccggtgttctatgatg 227  Q
    | |||||  ||| | ||||| ||||||||||||||||    
T  5107786 agcatagggcaggtggtgcttccggtgttctatgatg 5107750  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 5149782 - 5149714
Alignment:
Q  117 ttgttttttcaagaaattatgcagaatcacaatggtgtctcgatgagttggtgaagataatggagtgtc 185  Q
    |||||||||||||||| |||||| | || | |||||||||||| ||||||||||| |||||||| ||||    
T  5149782 ttgttttttcaagaaactatgcaaattcgcgatggtgtctcgaagagttggtgaaaataatggattgtc 5149714  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 5692961 - 5692893
Alignment:
Q  159 atgagttggtgaagataatggagtgtcacagaaccatagcacagatagtgctaccggtgttctatgatg 227  Q
    |||||||||| || ||||||||||||| |||||| ||||  ||||||||| | ||||||||||||||||    
T  5692961 atgagttggttaaaataatggagtgtcgcagaactatagggcagatagtgttgccggtgttctatgatg 5692893  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 5160578 - 5160488
Alignment:
Q  117 ttgttttttcaagaaattatgcagaatcacaatggtgtctcgatgagttggtgaagataatggagtgtcacagaaccatagcacagatagt 207  Q
    |||||||||||||||||||||| || || | |||||||||  ||||||| || ||| |||||||||||||   ||||||||  ||||||||    
T  5160578 ttgttttttcaagaaattatgcggattcgcgatggtgtctaaatgagttagtaaaggtaatggagtgtcagctaaccatagggcagatagt 5160488  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 5275945 - 5276023
Alignment:
Q  149 tggtgtctcgatgagttggtgaagataatggagtgtcacagaaccatagcacagatagtgctaccggtgttctatgatg 227  Q
    |||||| | |||||||||||||| |||||| | |||| |||||| ||||  ||||||||| | ||||||||||||||||    
T  5275945 tggtgtttggatgagttggtgaaaataatgaaatgtcgcagaactatagggcagatagtgttgccggtgttctatgatg 5276023  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 5366519 - 5366608
Alignment:
Q  106 aatttctattgttgttttttcaagaaattatgcagaatcacaatggtgtctcgatgagttggtgaagataatggagtgtcacagaaccat 195  Q
    |||||||||  | |||||||||| |||||| ||  |||| | ||||||||| ||||||||| ||| ||||||||||||||| | ||||||    
T  5366519 aatttctatcatcgttttttcaaaaaattacgcccaatcgcgatggtgtcttgatgagttgttgaggataatggagtgtcagaaaaccat 5366608  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 5444102 - 5444189
Alignment:
Q  91 aattgaacaatgtaaaatttctattgttgttttttcaagaaattatgcagaatcacaatggtgtctcgatgagttggtgaagataatg 178  Q
    ||||||||||| | ||||||||||  |||||||||||| ||||||||| || || | ||||||| |  |||| |||||||| ||||||    
T  5444102 aattgaacaatctcaaatttctataattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatg 5444189  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 5105553 - 5105505
Alignment:
Q  140 gaatcacaatggtgtctcgatgagttggtgaagataatggagtgtcaca 188  Q
    ||||| ||||||||||| || |||||||||||||||| |||||| ||||    
T  5105553 gaatcgcaatggtgtcttgaagagttggtgaagataacggagtgccaca 5105505  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 25567064 - 25567144
Alignment:
Q  116 gttgttttttcaagaaattatgcagaatcacaatggtgtctcgatgagttggtgaagataatggagtgtcacagaaccata 196  Q
    |||||||||||||   |||| || || ||| |||||||| |  |||||||||||||||||||| ||||||| ||| |||||    
T  25567064 gttgttttttcaaagcattacgcggattcaaaatggtgtttgaatgagttggtgaagataatgaagtgtcatagagccata 25567144  T

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