View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_80 (Length: 240)
Name: NF6210_low_80
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_80 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 35934554 - 35934334
Alignment:
| Q |
1 |
aactaactttatgattatttgtacttcaaatttttcagatagggaatgcttggattgatgatgctacaggtgacaaggggttatttgattacttctggac |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35934554 |
aactaacttcatgattatttgtacttcaaatttttcagatagggaatgcttggattgatgatgctacaggtgacaaggggttatttgattacttctggac |
35934455 |
T |
|
| Q |
101 |
tcatgctttgaactcagatcaaactcatgagttgattgagaagtactgtgacttcactaaacaaaattattcaacaatttgtatcaatgtaacagattgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35934454 |
tcatgctttgaactcagatcaaactcatgagttgattgagaagtactgtgacttcactaaacaaaattattcaacaatttgtatcaatgtaacagattgg |
35934355 |
T |
|
| Q |
201 |
gccttcattgagaaaggaaag |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
35934354 |
gccttcattgagaaaggaaag |
35934334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 35940088 - 35939932
Alignment:
| Q |
33 |
tttcagatagggaatgcttggattgatgatgctacaggtgacaaggggttatttgattacttctggactcatgctttgaactcagatcaaactcatgagt |
132 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| || |||||||||| |||| |||| |||||||||||||||||||| |||||||||||||||| |
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| T |
35940088 |
tttcagttagggaatgcttggattgatgatgctacaagtttaaaggggttatatgataacttgtggactcatgctttgaactcggatcaaactcatgagt |
35939989 |
T |
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| Q |
133 |
tgattgagaagtactgtgacttcactaaacaaaattattcaacaatttgtatcaatg |
189 |
Q |
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| T |
35939988 |
tgattgagaagtactgtgacttcactaaacaaaattattcagcaatttgtaccaatg |
35939932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 35910308 - 35910153
Alignment:
| Q |
33 |
tttcagatagggaatgcttggattgatgatgctacaggtgacaaggggttatttgattacttctggactcatgctttgaactcagatcaaactcatgagt |
132 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| || |||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
35910308 |
tttcagatagggaatgcttggattgatgatgccacaagtttaaaggggttttttgattacctttggactcatgctttgaactcagatcaaactcatgagt |
35910209 |
T |
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| Q |
133 |
tgattgagaagtactgtgacttcactaaacaaaattattcaacaatttgtatcaat |
188 |
Q |
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||||||||||||||||||||||||||| ||||| |||| |||||||||||||| |
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| T |
35910208 |
tgattgagaagtactgtgacttcactactgaaaatgtttcagcaatttgtatcaat |
35910153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 158
Target Start/End: Complemental strand, 35927708 - 35927583
Alignment:
| Q |
33 |
tttcagatagggaatgcttggattgatgatgctacaggtgacaaggggttatttgattacttctggactcatgctttgaactcagatcaaactcatgagt |
132 |
Q |
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|||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
35927708 |
tttcagatagggaatgcttggattgatgatgccacaagtttgaaggggttatttgattacttttggactcatgctttgaattcagatcaaactcatgagt |
35927609 |
T |
|
| Q |
133 |
tgattgagaagtactgtgacttcact |
158 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
35927608 |
tgattgagaagtactgtgacttcact |
35927583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 35921115 - 35920927
Alignment:
| Q |
33 |
tttcagatagggaatgcttggattgatgatgctacaggtgacaaggggttatttgattacttctggactcatgctttgaactcagatcaaactcatgagt |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | |||||| ||| |||| |||| |||||||||||||| |||||||||||||||||||||| |
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| T |
35921115 |
tttcagatagggaatgcttggattgatgatgcgacgaatttaaaggggatatatgataacttgtggactcatgctttaaactcagatcaaactcatgagt |
35921016 |
T |
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| Q |
133 |
tgattgagaagtactgtgacttcactaaacaaaattattcaacaatttgtatcaatgtaacagattgggccttcattgagaaaggaaag |
221 |
Q |
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||||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||| ||| ||| ||||||| |||||| ||||||| |
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| T |
35921015 |
tgattgagaagtactgtgacttcactaaagaaaatgtttcagcaatttgtaacaatgcaactgataaggccttcgttgagacaggaaag |
35920927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 35914743 - 35914555
Alignment:
| Q |
33 |
tttcagatagggaatgcttggattgatgatgctacaggtgacaaggggttatttgattacttctggactcatgctttgaactcagatcaaactcatgagt |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| | ||||||||||| |||||||| |||||||||||||||| |
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| T |
35914743 |
tttcagatagggaatgcttggattgatgatgccacaggtttaagggggttatttgattacctttggactcatgcgttgaactcggatcaaactcatgagt |
35914644 |
T |
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| Q |
133 |
tgattgagaagtactgtgacttcactaaacaaaattattcaacaatttgtatcaatgtaacagattgggccttcattgagaaaggaaag |
221 |
Q |
| |
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||||||||||||| |||||||||||| |||| |||| ||||||||||||||| |||| || ||||||| ||||| |||||||| |
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| T |
35914643 |
tgattgagaagtattgtgacttcacttctgaaaacgtttcatcaatttgtatcaatgcaacacataaggccttccttgagcaaggaaag |
35914555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 21285096 - 21285156
Alignment:
| Q |
128 |
tgagttgattgagaagtactgtgacttcactaaacaaaattattcaacaatttgtatcaat |
188 |
Q |
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||||||||||||||||||||||| |||||||| ||||| |||| |||||||||||||| |
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| T |
21285096 |
tgagttgattgagaagtactgtggcttcactactgaaaatgtttcagcaatttgtatcaat |
21285156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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