View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_85 (Length: 236)
Name: NF6210_low_85
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_85 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 35 - 221
Target Start/End: Original strand, 3737344 - 3737531
Alignment:
| Q |
35 |
cctctcaatatcatctatttcttccacatactcnnnnnnnn-cttccaaacctctcgtatcgtttctcctccaaactcgcaaataaaacatcaatttaag |
133 |
Q |
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| T |
3737344 |
cctctcaatatcatctatttcttccacatgctctttttttttcttccaaacctctcgtatcttttctcctccaaactcgcaaataaaacatcaatttaag |
3737443 |
T |
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| Q |
134 |
tgaactaatttagtttgttnnnnnnnnnnnnnnnngtgtagttttctcattggttgcttccttatgatatgcaaattaaaatggtttt |
221 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3737444 |
tgaactaatttagtttgttgaaaaataaaaataaagtgtagttttctcattggttgcttccttatgatatgcaaattaaaatggtttt |
3737531 |
T |
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