View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6210_low_86 (Length: 236)
Name: NF6210_low_86
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6210_low_86 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8180486 - 8180707
Alignment:
| Q |
1 |
ttgtttggtcgtatgattgattctctcggacacctttctagcaatcctcacaaattttcctcacaaatttctcaggtaaaaacaacatcaaccatattta |
100 |
Q |
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| T |
8180486 |
ttgtttggtcgtatgattgattctctcggacacctttctagcaatcctcacaaattttcctcacaaatttctcaggtaaaaacaacatcaaccatattta |
8180585 |
T |
|
| Q |
101 |
tttgattatgcaaagagagagacaaataaagtgggnnnnnnnngatggcataacatgcattattctatactaaactatgatgactctggcctcttcaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8180586 |
tttgattatgcaaagagagagacaaataaagtggg-aaaaaaagatggcataacatgcattattctatactaaactatgatgactctggcctcttcaaca |
8180684 |
T |
|
| Q |
201 |
aactcctctaacatgtatatgtt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
8180685 |
aactcctctaacatgtatatgtt |
8180707 |
T |
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