View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_low_91 (Length: 228)

Name: NF6210_low_91
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_low_91
NF6210_low_91
[»] chr2 (7 HSPs)
chr2 (3-228)||(3737030-3737256)
chr2 (165-224)||(8184117-8184177)
chr2 (165-225)||(14385144-14385205)
chr2 (129-158)||(5093546-5093575)
chr2 (165-225)||(11522136-11522197)
chr2 (164-216)||(36641930-36641983)
chr2 (165-225)||(42946680-42946741)
[»] chr4 (9 HSPs)
chr4 (1-146)||(22225607-22225751)
chr4 (165-225)||(52430531-52430592)
chr4 (117-164)||(3695199-3695246)
chr4 (164-216)||(368130-368183)
chr4 (169-225)||(24662707-24662764)
chr4 (165-225)||(37662707-37662768)
chr4 (165-216)||(28880064-28880116)
chr4 (165-205)||(43167048-43167088)
chr4 (165-216)||(48620362-48620414)
[»] chr3 (17 HSPs)
chr3 (1-143)||(33277811-33277951)
chr3 (3-132)||(52006155-52006285)
chr3 (3-133)||(39192552-39192681)
chr3 (165-225)||(7302148-7302209)
chr3 (117-169)||(11654084-11654136)
chr3 (165-224)||(46891451-46891511)
chr3 (165-208)||(39966834-39966877)
chr3 (165-216)||(50201639-50201690)
chr3 (165-225)||(4247181-4247242)
chr3 (169-225)||(11500165-11500222)
chr3 (165-225)||(15499255-15499316)
chr3 (117-146)||(18715702-18715731)
chr3 (165-225)||(27922025-27922086)
chr3 (165-225)||(29623300-29623361)
chr3 (165-225)||(32858894-32858955)
chr3 (165-225)||(35283151-35283212)
chr3 (165-216)||(52620791-52620843)
[»] chr1 (11 HSPs)
chr1 (6-165)||(38452382-38452543)
chr1 (1-165)||(42760499-42760665)
chr1 (164-225)||(28848754-28848816)
chr1 (165-225)||(41432718-41432779)
chr1 (164-208)||(32287662-32287706)
chr1 (165-220)||(9315011-9315066)
chr1 (165-208)||(9861273-9861316)
chr1 (117-165)||(12377212-12377261)
chr1 (165-225)||(20712172-20712233)
chr1 (167-208)||(34749973-34750014)
chr1 (165-225)||(39886880-39886941)
[»] chr8 (11 HSPs)
chr8 (1-164)||(15451089-15451255)
chr8 (165-225)||(27085412-27085473)
chr8 (126-168)||(13904001-13904043)
chr8 (165-225)||(16424202-16424263)
chr8 (114-165)||(5704312-5704364)
chr8 (165-208)||(28517216-28517259)
chr8 (165-207)||(10878738-10878780)
chr8 (164-225)||(41866082-41866144)
chr8 (165-225)||(1839776-1839837)
chr8 (165-225)||(41455323-41455384)
chr8 (165-205)||(32158850-32158890)
[»] chr5 (8 HSPs)
chr5 (165-225)||(19389784-19389845)
chr5 (165-225)||(29799701-29799762)
chr5 (165-208)||(12063942-12063985)
chr5 (117-174)||(8316396-8316453)
chr5 (165-225)||(17668090-17668151)
chr5 (165-216)||(1935063-1935115)
chr5 (164-208)||(2679841-2679885)
chr5 (165-216)||(5088826-5088878)
[»] scaffold0007 (1 HSPs)
scaffold0007 (184-225)||(68925-68966)
[»] chr7 (11 HSPs)
chr7 (165-225)||(21687497-21687558)
chr7 (165-228)||(7347843-7347907)
chr7 (164-225)||(13044211-13044273)
chr7 (164-225)||(33872075-33872137)
chr7 (164-225)||(38505299-38505361)
chr7 (165-225)||(1278002-1278063)
chr7 (165-206)||(4787959-4788000)
chr7 (165-225)||(14676294-14676355)
chr7 (164-208)||(35264847-35264891)
chr7 (165-216)||(43348195-43348247)
chr7 (165-216)||(43741768-43741820)
[»] chr6 (4 HSPs)
chr6 (183-225)||(13380595-13380638)
chr6 (108-165)||(1603996-1604054)
chr6 (165-225)||(20381822-20381883)
chr6 (164-208)||(20820495-20820539)
[»] scaffold0263 (1 HSPs)
scaffold0263 (164-225)||(12214-12276)
[»] scaffold0119 (1 HSPs)
scaffold0119 (164-225)||(37185-37247)
[»] scaffold0002 (1 HSPs)
scaffold0002 (166-225)||(90842-90902)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 3737030 - 3737256
Alignment:
Q  3 gagtgtgttgtataaacgtgtaaaggaaaataaatttacaagtattaaatacaactgtttctaatttttctcattaactgacttatttttaactttaatt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||    
T  3737030 gagtgtgttgtataaacgtgtaaaggaaaataaatttacaagtattaaatataactgtttttaatttttctcgttaattgacttatttttaactttaatt 3737129  T
Q  103 gagggaatccatttatttattgctccttaactagtgccccggggcaccggttaacaacaccctatatttttagtttaaaaaatattataactacatatat 202  Q
    ||||||||| |||||||||||||||||||||| || ||||| | ||||||||| || ||||||||||||||| ||| |||||||||||||||||||||||    
T  3737130 gagggaatctatttatttattgctccttaactggtaccccgagacaccggttagcagcaccctatatttttaattttaaaaatattataactacatatat 3737229  T
Q  203 taaa-ttgaagaatttatgtaaacact 228  Q
    |||| ||||||||||||||||||||||    
T  3737230 taaatttgaagaatttatgtaaacact 3737256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 8184117 - 8184177
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaat-tgaagaatttatgtaaa 224  Q
    |||||||||| ||||||||||||||||| |||||| ||||||| ||||||||| |||||||    
T  8184117 tatatttttaatttaaaaaatattataagtacatagattaaatctgaagaattcatgtaaa 8184177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 14385205 - 14385144
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| ||| |||||||||||||||||||| |||||| ||||||| || ||||||||    
T  14385205 tatatttttaattttaaaaatattataactacatagattaaatttgaagatttcatgtaaac 14385144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 158
Target Start/End: Complemental strand, 5093575 - 5093546
Alignment:
Q  129 ttaactagtgccccggggcaccggttaaca 158  Q
    ||||||||||||||||||||||||||||||    
T  5093575 ttaactagtgccccggggcaccggttaaca 5093546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 11522136 - 11522197
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| ||| || ||||||||||| |||||||||||| |||||||||| || |||||    
T  11522136 tatatttttaattttaagaatattataacaacatatattaaatttgaagaattcatataaac 11522197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 36641930 - 36641983
Alignment:
Q  164 ctatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatt 216  Q
    ||||||||||| ||| |||||||||||||| ||| |||||||| ||||||||||    
T  36641930 ctatatttttaattttaaaaatattataacaacacatattaaatttgaagaatt 36641983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 42946680 - 42946741
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| ||| || |||| |||||| |||||||||||| ||||||||||||| |||||    
T  42946680 tatatttttaattttaagaatagtataacaacatatattaaatttgaagaatttatataaac 42946741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 22225751 - 22225607
Alignment:
Q  1 gcgagtgtgttgtataaacgtgtaaaggaaaataaatttacaagtattaaatacaactgtttctaatttttctcattaactgacttatttttaactttaa 100  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||     
T  22225751 gcgagtgtgttgtataaccgtgtaaaggaaaataaatt-acaagtattaaatacaactgtttctaattattctcattaattgatttatttttaactttag 22225653  T
Q  101 ttgagggaatccatttatttattgctccttaactagtgccccgggg 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22225652 ttgagggaatccatttatttattgctccttaactagtgccccgggg 22225607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 52430531 - 52430592
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| ||| |||||||||||||| |||||||||||| |||||||||| || |||||    
T  52430531 tatatttttaattttaaaaatattataacaacatatattaaatttgaagaattcatataaac 52430592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 3695199 - 3695246
Alignment:
Q  117 atttattgctccttaactagtgccccggggcaccggttaacaacaccc 164  Q
    ||||||||||||||||| |||||| ||||||||| |||| ||||||||    
T  3695199 atttattgctccttaaccagtgccgcggggcaccagttagcaacaccc 3695246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 368183 - 368130
Alignment:
Q  164 ctatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatt 216  Q
    ||||||||||| ||| |||||||||||||| ||||| |||||| ||||||||||    
T  368183 ctatatttttaattttaaaaatattataacaacataaattaaatttgaagaatt 368130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 24662707 - 24662764
Alignment:
Q  169 tttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||| ||| ||||||||||||||||||| ||||||| ||||| |||| ||||||||    
T  24662707 tttttaattttaaaaatattataactacatgtattaaatttgaaaaattcatgtaaac 24662764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 37662768 - 37662707
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| ||| |||||||||||||  |||||||||||| |||||||||| || |||||    
T  37662768 tatatttttaattttaaaaatattataagaacatatattaaatttgaagaattcatctaaac 37662707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 28880116 - 28880064
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatt 216  Q
    |||||||||| ||| || ||||||||||| |||||||||||| ||||||||||    
T  28880116 tatatttttaattttaagaatattataacaacatatattaaatttgaagaatt 28880064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 43167048 - 43167088
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaa 205  Q
    |||||||||| ||| |||||||||||||| |||||||||||    
T  43167048 tatatttttaattttaaaaatattataacaacatatattaa 43167088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 48620414 - 48620362
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatt 216  Q
    |||||||||| ||| || ||||||||||| |||||||||||| ||||||||||    
T  48620414 tatatttttaattttaagaatattataacaacatatattaaatttgaagaatt 48620362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 33277811 - 33277951
Alignment:
Q  1 gcgagtgtgttgtataaacgtgtaaaggaaaataaatttacaagtattaaatacaactgtttctaatttttctcattaactgacttatttttaactttaa 100  Q
    |||||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  33277811 gcgagtgtgttgtataac--tgtaaaggaaaataaatttacaaatattaaatacaactgtttctaattattcttattaattgacttatttttaactttaa 33277908  T
Q  101 ttgagggaatccatttatttattgctccttaactagtgccccg 143  Q
    ||||| |||||||||||||||||||||||||||  ||||||||    
T  33277909 ttgagtgaatccatttatttattgctccttaaccggtgccccg 33277951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 52006285 - 52006155
Alignment:
Q  3 gagtgtgttgtataaacgtgtaaaggaaaataaattt-acaagtattaaatacaactgtttctaatttttctcattaactgacttatttttaactttaat 101  Q
    |||||||| |||||| |||||||||||||| |||||| || |||||||||||||||| |||| |||| |||||||||| |||||||||||||||||||||    
T  52006285 gagtgtgtagtataaccgtgtaaaggaaaagaaattttacgagtattaaatacaactatttcaaattattctcattaattgacttatttttaactttaat 52006186  T
Q  102 tgagggaatccatttatttattgctccttaa 132  Q
    ||| |||||||| ||||||||||||||||||    
T  52006185 tgaaggaatccaattatttattgctccttaa 52006155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 39192552 - 39192681
Alignment:
Q  3 gagtgtgttgtataaacgtgtaaaggaaaataaatttacaagtattaaatacaactgtttctaatttttctcattaactgacttatttttaactttaatt 102  Q
    |||||||| |||||| |||||||||||||| || ||||||||||||||||||||||||||| |||| |||||||||| | ||||| ||| || |||||||    
T  39192552 gagtgtgtagtataaccgtgtaaaggaaaagaattttacaagtattaaatacaactgtttcaaattattctcattaattaactta-tttaaattttaatt 39192650  T
Q  103 gagggaatccatttatttattgctccttaac 133  Q
    |||||||| || |||||||||||||||||||    
T  39192651 gagggaattcaattatttattgctccttaac 39192681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 7302209 - 7302148
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||||||| || ||||||||||||| ||| |||||| |||||||||| ||||||||    
T  7302209 tatatttttagttttaagaatattataactatatagattaaatttgaagaattcatgtaaac 7302148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 11654136 - 11654084
Alignment:
Q  117 atttattgctccttaactagtgccccggggcaccggttaacaacaccctatat 169  Q
    ||||||||||||||||| ||||||||| | || |||||| |||||||||||||    
T  11654136 atttattgctccttaaccagtgccccgtgacatcggttagcaacaccctatat 11654084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 46891511 - 46891451
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaa 224  Q
    |||||||||| ||| || ||||||||||| |||||||||||| ||||||||||||| ||||    
T  46891511 tatatttttaattttaagaatattataacaacatatattaaatttgaagaatttatataaa 46891451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 39966834 - 39966877
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaatt 208  Q
    |||||||||| ||| |||||||||||||| ||||||||||||||    
T  39966834 tatatttttaattttaaaaatattataacaacatatattaaatt 39966877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 50201690 - 50201639
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaattgaagaatt 216  Q
    |||||||||||||| || |||||||||||  |||||||||| ||||||||||    
T  50201690 tatatttttagttttaagaatattataacaccatatattaatttgaagaatt 50201639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 4247242 - 4247181
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| ||| || ||||||||||||| ||| |||||| |||||||||| ||||||||    
T  4247242 tatatttttaattttaagaatattataactaaatagattaaatttgaagaattcatgtaaac 4247181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 11500222 - 11500165
Alignment:
Q  169 tttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||| ||| || ||||||||||| |||||||||||| |||||||||| ||||||||    
T  11500222 tttttaattttaagaatattataacaacatatattaaatttgaagaattaatgtaaac 11500165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 15499255 - 15499316
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||| | ||| || ||||||||||||||||| |||||| ||||| |||||||||||||    
T  15499255 tatattttaaattttaagaatattataactacatagattaaatttgaaaaatttatgtaaac 15499316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 18715702 - 18715731
Alignment:
Q  117 atttattgctccttaactagtgccccgggg 146  Q
    ||||||||||||||||||||||||||||||    
T  18715702 atttattgctccttaactagtgccccgggg 18715731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 27922086 - 27922025
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| |||  ||||||||||||| ||||| |||||| |||||||||| ||||||||    
T  27922086 tatatttttaatttttaaaatattataacaacataaattaaatttgaagaattcatgtaaac 27922025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 29623361 - 29623300
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| | | |||||||||||||| |||||||||||| |||||||||| || |||||    
T  29623361 tatatttttaatattaaaaatattataacaacatatattaaatttgaagaattcatataaac 29623300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 32858955 - 32858894
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| ||| || ||||||||||||||||| |||||| |||| ||||| ||||||||    
T  32858955 tatatttttaattttaagaatattataactacatagattaaatttgatgaattcatgtaaac 32858894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 35283212 - 35283151
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaat-tgaagaatttatgtaaac 225  Q
    |||||||||| ||| || ||||||||||| ||||||||||||| ||||||||| || |||||    
T  35283212 tatatttttaattttaagaatattataacaacatatattaaatatgaagaattcatataaac 35283151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 52620791 - 52620843
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatt 216  Q
    |||||||||  ||| |||||||||||||| |||||||||||| ||||||||||    
T  52620791 tatattttttattttaaaaatattataacaacatatattaaatttgaagaatt 52620843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 165
Target Start/End: Original strand, 38452382 - 38452543
Alignment:
Q  6 tgtgttgtataaacgtgtaaaggaaaataaattt-acaagtattaaatacaactgtttctaatttttctcattaactgacttatttttaactttaattga 104  Q
    |||||||| ||| |||||||||||||| |||||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  38452382 tgtgttgtgtaatcgtgtaaaggaaaagaaattttacaagtattaaatacaactgtttttaattattctcattaattgacttatttttaactttaattga 38452481  T
Q  105 gggaatccatttatttattgctccttaactagtg-ccccggggcaccggttaacaacaccct 165  Q
    | ||||||||||||||||||||||||||| ||||  || ||| ||||||||| |||||||||    
T  38452482 gagaatccatttatttattgctccttaaccagtgttccagggacaccggttagcaacaccct 38452543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 42760665 - 42760499
Alignment:
Q  1 gcgagtgtgttgtataaacgtgtaaaggaaaataaattt-acaagtattaaatacaactgtttctaatttttctcattaactgacttatttttaacttta 99  Q
    |||| |||||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||| ||||| ||||||| || |||||||||||||||||||    
T  42760665 gcgaatgtgttgtataatcgtgtaaaagaaaagaaattttacaagtattaaatacaactgtttttaattattctcatcaattgacttatttttaacttta 42760566  T
Q  100 attgagggaatccatttatttattgctccttaactagtgccccggg-gcaccggttaacaacaccct 165  Q
    ||| |||||||||||||||||||||||| ||||| |||| |||||| ||| ||||||||| ||||||    
T  42760565 attaagggaatccatttatttattgctcattaaccagtgtcccgggagcatcggttaacagcaccct 42760499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 28848754 - 28848816
Alignment:
Q  164 ctatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    ||||||||||| ||| ||||||||||||||||| || |||||| |||||||||| ||||||||    
T  28848754 ctatatttttaattttaaaaatattataactacttagattaaatttgaagaattcatgtaaac 28848816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 41432718 - 41432779
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| ||| || ||||||||||||||||| |||||| |||||||||| ||||||||    
T  41432718 tatatttttaattttaagaatattataactacatagattaaatttgaagaattcatgtaaac 41432779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 32287706 - 32287662
Alignment:
Q  164 ctatatttttagtttaaaaaatattataactacatatattaaatt 208  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||    
T  32287706 ctatatttttagttttaaaaatattatatcaacatatattaaatt 32287662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 9315011 - 9315066
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaattgaagaatttatg 220  Q
    |||||||| | ||| || ||||||||||||||||| ||||| ||||||||||||||    
T  9315011 tatattttaaattttaagaatattataactacatagattaatttgaagaatttatg 9315066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 9861273 - 9861316
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaatt 208  Q
    |||||||||| ||| |||||||||||||| ||||||||||||||    
T  9861273 tatatttttaattttaaaaatattataacaacatatattaaatt 9861316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 12377261 - 12377212
Alignment:
Q  117 atttattgctccttaactagtgccccgg-ggcaccggttaacaacaccct 165  Q
    ||||||||||||||||| |||| ||||| ||||||||||| |||||||||    
T  12377261 atttattgctccttaaccagtgtcccggaggcaccggttagcaacaccct 12377212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 20712172 - 20712233
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatatt-aaattgaagaatttatgtaaac 225  Q
    |||||||||| ||| |||||||||||||| ||||| ||| || ||||||||||||| |||||    
T  20712172 tatatttttaattttaaaaatattataacaacatagattgaatttgaagaatttatataaac 20712233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 34749973 - 34750014
Alignment:
Q  167 tatttttagtttaaaaaatattataactacatatattaaatt 208  Q
    |||||||| ||| |||||||||||||||||||| ||||||||    
T  34749973 tatttttaattttaaaaatattataactacataaattaaatt 34750014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 39886880 - 39886941
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||||||| ||||||| |||||| ||||| |||||| |||||||||| || |||||    
T  39886880 tatatttttagttttaaaaataatataacaacatagattaaatttgaagaattcatataaac 39886941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 15451089 - 15451255
Alignment:
Q  1 gcgagtgtgttgtataaacgtgtaaaggaaaataaattt-acaagtattaaatacaactgtttctaatttttctcattaactgacttatttt-taacttt 98  Q
    |||| |||||||||||| |||| ||||||||| |||||| ||||||||||||||||||| ||| ||||| |||||||||| ||||||||||  |||||||    
T  15451089 gcgaatgtgttgtataatcgtgcaaaggaaaagaaattttacaagtattaaatacaactatttttaattattctcattaattgacttatttaataacttt 15451188  T
Q  99 aattgagggaatccatttatttattgctccttaactagtgccccgg-ggcaccggttaacaacaccc 164  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| || |||||    
T  15451189 aattgagagaatccatttatttattgctccttaaccagtgccccggaggcaccggttagcagcaccc 15451255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 27085473 - 27085412
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| |||||||||||||||||| |||||||||||| |||||||||| || |||||    
T  27085473 tatatttttaatttaaaaaatattataacaacatatattaaatttgaagaattcatataaac 27085412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 13904043 - 13904001
Alignment:
Q  126 tccttaactagtgccccggggcaccggttaacaacaccctata 168  Q
    |||||||| ||||||||||||||||||||||||| ||||||||    
T  13904043 tccttaaccagtgccccggggcaccggttaacaaaaccctata 13904001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 16424263 - 16424202
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| ||| || |||||||||||||||||||||||| |||||||||| || |||||    
T  16424263 tatatttttaattttaagaatattataactacatatattaaatttgaagaattcatataaac 16424202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 5704312 - 5704364
Alignment:
Q  114 tttatttattgctccttaactagtgcccc-ggggcaccggttaacaacaccct 165  Q
    |||||||||||||||||||| |||||||| ||||||| ||||| |||||||||    
T  5704312 tttatttattgctccttaacaagtgccccaggggcactggttagcaacaccct 5704364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 28517216 - 28517259
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaatt 208  Q
    |||||||||| ||| || ||||||||||||||||||||||||||    
T  28517216 tatatttttaattttaagaatattataactacatatattaaatt 28517259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 10878738 - 10878780
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaat 207  Q
    |||||||||| ||| |||||||||||||| |||||||||||||    
T  10878738 tatatttttaattttaaaaatattataacaacatatattaaat 10878780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 41866082 - 41866144
Alignment:
Q  164 ctatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    ||||||||||| ||| ||||||| |||||| ||||| |||||| ||||||||||||| |||||    
T  41866082 ctatatttttaattttaaaaataatataacaacatagattaaatttgaagaatttatataaac 41866144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 1839776 - 1839837
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    ||||| |||| ||| |||||||||||||| |||||||||||| |||||||||| || |||||    
T  1839776 tatatgtttaattttaaaaatattataacaacatatattaaatttgaagaattcatataaac 1839837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 41455384 - 41455323
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| ||| || ||||||||||| |||||||||||| |||||||||| || |||||    
T  41455384 tatatttttaattttaagaatattataacaacatatattaaatttgaagaattcatataaac 41455323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 32158890 - 32158850
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaa 205  Q
    |||||||||| ||| |||||||||||||| |||||||||||    
T  32158890 tatatttttaattttaaaaatattataacaacatatattaa 32158850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 19389784 - 19389845
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| ||| |||||||||||||||||||| |||||| |||||||||| ||||||||    
T  19389784 tatatttttaattttaaaaatattataactacatagattaaatttgaagaattcatgtaaac 19389845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 29799762 - 29799701
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| ||| |||||||||||||  |||||||||||| ||||||||||||| |||||    
T  29799762 tatatttttaattttaaaaatattataataacatatattaaatttgaagaatttatataaac 29799701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 12063942 - 12063985
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaatt 208  Q
    |||||||||| ||| |||||||||||||| ||||||||||||||    
T  12063942 tatatttttaattttaaaaatattataacaacatatattaaatt 12063985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 8316396 - 8316453
Alignment:
Q  117 atttattgctccttaactagtgccccggggcaccggttaacaacaccctatattttta 174  Q
    ||||||||||||||||| ||||| |||||||| |||||| || |||||| || |||||    
T  8316396 atttattgctccttaaccagtgctccggggcatcggttagcagcaccctttaatttta 8316453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 17668090 - 17668151
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||| | ||| || ||||||||||||||||| |||||| |||||||||| ||||||||    
T  17668090 tatattttcaattttaagaatattataactacatagattaaatttgaagaattcatgtaaac 17668151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 1935063 - 1935115
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatt 216  Q
    |||||||||| ||| || ||||||||||| |||||||||||| ||||||||||    
T  1935063 tatatttttaattttaagaatattataacaacatatattaaatttgaagaatt 1935115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 2679841 - 2679885
Alignment:
Q  164 ctatatttttagtttaaaaaatattataactacatatattaaatt 208  Q
    ||||||||||| ||| |||||||||||||| ||||| ||||||||    
T  2679841 ctatatttttaattttaaaaatattataacaacatagattaaatt 2679885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 5088826 - 5088878
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatt 216  Q
    |||||||||| ||| || ||||||||||||||||| |||||| ||||||||||    
T  5088826 tatatttttaattttaagaatattataactacataaattaaatttgaagaatt 5088878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 68925 - 68966
Alignment:
Q  184 atattataactacatatattaaattgaagaatttatgtaaac 225  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  68925 atattataattacatatattaaattgaagaattcatgtaaac 68966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 21687558 - 21687497
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| ||| |||||||||||||| || ||||||||| ||||||||||||| |||||    
T  21687558 tatatttttaattttaaaaatattataacaacttatattaaatttgaagaatttatataaac 21687497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 7347843 - 7347907
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaa-attgaagaatttatgtaaacact 228  Q
    |||||||||| ||| |||||||||||||||||||| || ||  |||||||||| |||||||||||    
T  7347843 tatatttttaattttaaaaatattataactacatagataaactttgaagaattcatgtaaacact 7347907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 13044273 - 13044211
Alignment:
Q  164 ctatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    ||||||||||| ||| ||||||| |||||| |||||||||||| |||||||||| || |||||    
T  13044273 ctatatttttaattttaaaaataatataacaacatatattaaatttgaagaattcatataaac 13044211  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 33872075 - 33872137
Alignment:
Q  164 ctatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    ||||||||||| ||||||||||| |||||| ||||| |||||| |||||||||| || |||||    
T  33872075 ctatatttttaatttaaaaaataatataacaacatagattaaatttgaagaattcatataaac 33872137  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 38505299 - 38505361
Alignment:
Q  164 ctatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    ||||||||||| ||| |||||||||||||| ||||| |||||| |||||||||| || |||||    
T  38505299 ctatatttttaattttaaaaatattataacaacatagattaaatttgaagaattcatataaac 38505361  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 1278063 - 1278002
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||||| ||| || ||||||||||| |||||||||||| |||||||||| || |||||    
T  1278063 tatatttttaattttaagaatattataacaacatatattaaatttgaagaattcatataaac 1278002  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 4787959 - 4788000
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa 206  Q
    |||||||||| ||| |||||||||||||| ||||||||||||    
T  4787959 tatatttttaattttaaaaatattataacaacatatattaaa 4788000  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 14676355 - 14676294
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    |||||||| | ||| || ||||||||||||||||| |||||| |||||||||| ||||||||    
T  14676355 tatattttcaattttaagaatattataactacatagattaaatttgaagaattcatgtaaac 14676294  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 35264847 - 35264891
Alignment:
Q  164 ctatatttttagtttaaaaaatattataactacatatattaaatt 208  Q
    ||||||||||| ||| |||||||||||||| ||||| ||||||||    
T  35264847 ctatatttttaattttaaaaatattataacaacataaattaaatt 35264891  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 43348195 - 43348247
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatt 216  Q
    |||||||||| ||| |||||||||||||| ||||| |||||| ||||||||||    
T  43348195 tatatttttaattttaaaaatattataacaacatagattaaatttgaagaatt 43348247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 43741820 - 43741768
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatt 216  Q
    |||||||||| ||| ||||||||||||| |||||| |||||| ||||||||||    
T  43741820 tatatttttaattttaaaaatattataattacataaattaaatttgaagaatt 43741768  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 13380638 - 13380595
Alignment:
Q  183 aatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  13380638 aatattataactacatagattaaatttgaagaatttatgtaaac 13380595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 1604054 - 1603996
Alignment:
Q  108 aatccatttatttattgctccttaactagtgcccc-ggggcaccggttaacaacaccct 165  Q
    |||| ||| |||||||||| |||||| |||||||| ||||||||||||| |||||||||    
T  1604054 aatctattcatttattgcttcttaaccagtgccccgggggcaccggttagcaacaccct 1603996  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 20381822 - 20381883
Alignment:
Q  165 tatatttttagtttaaaaaatattataactacatatatt-aaattgaagaatttatgtaaac 225  Q
    |||||||||| ||| || ||||||||||| ||||||||| ||||||||||||| || |||||    
T  20381822 tatatttttaattttaagaatattataacaacatatattaaaattgaagaattcatataaac 20381883  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 20820495 - 20820539
Alignment:
Q  164 ctatatttttagtttaaaaaatattataactacatatattaaatt 208  Q
    ||||||||||| ||| ||||||| |||||| ||||||||||||||    
T  20820495 ctatatttttaattttaaaaataatataacaacatatattaaatt 20820539  T

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Target: scaffold0263 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 12214 - 12276
Alignment:
Q  164 ctatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    ||||||||||| ||| |||||||||||||| ||||| |||||| |||||||||| || |||||    
T  12214 ctatatttttaattttaaaaatattataacaacatagattaaatttgaagaattcatataaac 12276  T

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Target: scaffold0119 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 37247 - 37185
Alignment:
Q  164 ctatatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    ||||||||||| ||| ||||||| |||||| |||||||||||| |||||||||| || |||||    
T  37247 ctatatttttaattttaaaaataatataacaacatatattaaatttgaagaattcatataaac 37185  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 90842 - 90902
Alignment:
Q  166 atatttttagtttaaaaaatattataactacatatattaaa-ttgaagaatttatgtaaac 225  Q
    ||||||||| ||| |||||||||||||| ||||| |||||| |||||||||| || |||||    
T  90842 atatttttaattttaaaaatattataacaacatagattaaatttgaagaattcatataaac 90902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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