View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_low_95 (Length: 226)

Name: NF6210_low_95
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_low_95
NF6210_low_95
[»] chr3 (1 HSPs)
chr3 (23-210)||(6789880-6790067)
[»] chr4 (4 HSPs)
chr4 (18-210)||(23566149-23566341)
chr4 (140-210)||(18395544-18395614)
chr4 (141-210)||(18320160-18320229)
chr4 (141-210)||(18398454-18398523)
[»] chr5 (1 HSPs)
chr5 (18-134)||(33688440-33688556)
[»] chr6 (2 HSPs)
chr6 (18-119)||(15866935-15867036)
chr6 (174-210)||(24544879-24544915)
[»] chr1 (2 HSPs)
chr1 (18-119)||(3283168-3283269)
chr1 (18-119)||(9310773-9310874)
[»] scaffold0251 (2 HSPs)
scaffold0251 (18-120)||(4901-5003)
scaffold0251 (157-210)||(4737-4790)
[»] chr2 (1 HSPs)
chr2 (174-210)||(18739930-18739966)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 6790067 - 6789880
Alignment:
Q  23 atccatcaaattctggtttgattacaggagttgaaaccggagtaattggagactcgaaactgcggaaaaggatgcgatcgtgagaagatgaagtttccgg 122  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  6790067 atccatcaaattctggttcgattacaggagttgaaaccggagtaattggagactcgaaactgccgaaaacgatgcgatcgtgagaagatgaagtttccgg 6789968  T
Q  123 aatcgcagaagcagaagctgcatcatcagattcttcatcttcatcaatgtctgaatcgaaagcggaagcatcatcatcttcctcccta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  6789967 aatcgcagaagcagaagctgcatcatcagattcttcatcttcatcgatgtctgaatcgaaagcagaagcatcatcatcttcctcccta 6789880  T

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Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 23566149 - 23566341
Alignment:
Q  18 ggagtatccatcaaattctggtttgattacaggagttgaaaccggagtaattggagactcgaaactgcggaaaaggatgcgatcgtgagaagatgaagtt 117  Q
    |||| |||||||||||||||||  ||||||| |||||||||| |||||||||||||||||||||||||  |||| ||||||||| |||||||||||||||    
T  23566149 ggagaatccatcaaattctggtgcgattacatgagttgaaactggagtaattggagactcgaaactgccaaaaaagatgcgatcttgagaagatgaagtt 23566248  T
Q  118 tccggaatcgcagaagcagaagctgcatcatcagattcttcatcttcatcaatgtctgaatcgaaagcggaagcatcatcatcttcctcccta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||    
T  23566249 tccggaatcgcagaagcagaagctgcatcatcagattcttcatcttcatcggtgtctgaatcgaaagcggaagcatcatcaacttcctcccta 23566341  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 18395544 - 18395614
Alignment:
Q  140 ctgcatcatcagattcttcatcttcatcaatgtctgaatcgaaagcggaagcatcatcatcttcctcccta 210  Q
    ||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||| ||| ||||||    
T  18395544 ctgcatcatcagattcttcatcttcatcaatttttgaatctaaagcagaagcatcatcatattcatcccta 18395614  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 18320229 - 18320160
Alignment:
Q  141 tgcatcatcagattcttcatcttcatcaatgtctgaatcgaaagcggaagcatcatcatcttcctcccta 210  Q
    |||||||| ||||||||||||||||||||| |  |||||  |||||||||||||||||||||| ||||||    
T  18320229 tgcatcattagattcttcatcttcatcaattttagaatctgaagcggaagcatcatcatcttcatcccta 18320160  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 18398454 - 18398523
Alignment:
Q  141 tgcatcatcagattcttcatcttcatcaatgtctgaatcgaaagcggaagcatcatcatcttcctcccta 210  Q
    |||||||| ||||||||||||||||||||| |  |||||  |||||||||||||||||||||| ||||||    
T  18398454 tgcatcattagattcttcatcttcatcaattttagaatctgaagcggaagcatcatcatcttcatcccta 18398523  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 33688556 - 33688440
Alignment:
Q  18 ggagtatccatcaaattctggtttgattacaggagttgaaaccggagtaattggagactcgaaactgcggaaaaggatgcgatcgtgagaagatgaagtt 117  Q
    |||| |||||||||||||||||||||||| |||| | |||| | ||||||||||||||||||||||||  ||||  ||| |||||||||||| ||||| |    
T  33688556 ggagaatccatcaaattctggtttgattaaaggattagaaatcagagtaattggagactcgaaactgccaaaaacaatgggatcgtgagaagctgaaggt 33688457  T
Q  118 tccggaatcgcagaagc 134  Q
    |||  ||||| ||||||    
T  33688456 tccttaatcggagaagc 33688440  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 15867036 - 15866935
Alignment:
Q  18 ggagtatccatcaaattctggtttgattacaggagttgaaaccggagtaattggagactcgaaactgcggaaaaggatgcgatcgtgagaagatgaagtt 117  Q
    |||| |||||||||||| ||||| ||||  |||||| |||||||||  ||||||||| || ||||||| ||||| ||||| ||||||||| | |||||||    
T  15867036 ggagaatccatcaaattttggttcgattgaaggagtagaaaccggaacaattggagaatcaaaactgccgaaaaagatgcaatcgtgagaggctgaagtt 15866937  T
Q  118 tc 119  Q
    ||    
T  15866936 tc 15866935  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 24544915 - 24544879
Alignment:
Q  174 tgaatcgaaagcggaagcatcatcatcttcctcccta 210  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  24544915 tgaatcgatagcggaagcatcatcatcttcatcccta 24544879  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 3283269 - 3283168
Alignment:
Q  18 ggagtatccatcaaattctggtttgattacaggagttgaaaccggagtaattggagactcgaaactgcggaaaaggatgcgatcgtgagaagatgaagtt 117  Q
    |||| |||||||||||| ||||| ||||  |||||| |||||||||  ||||||||| || ||||||| ||||| ||||| ||||||||| | |||||||    
T  3283269 ggagaatccatcaaattttggttcgattgaaggagtagaaaccggaacaattggagaatcaaaactgccgaaaaagatgcaatcgtgagaggctgaagtt 3283170  T
Q  118 tc 119  Q
    ||    
T  3283169 tc 3283168  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 9310874 - 9310773
Alignment:
Q  18 ggagtatccatcaaattctggtttgattacaggagttgaaaccggagtaattggagactcgaaactgcggaaaaggatgcgatcgtgagaagatgaagtt 117  Q
    |||| |||||||||||| ||||| ||||  |||||| |||||||||  ||||||||| || ||||||| ||||| ||||| ||||||||| | |||||||    
T  9310874 ggagaatccatcaaattttggttcgattgaaggagtagaaaccggaacaattggagaatcaaaactgccgaaaaagatgcaatcgtgagaggctgaagtt 9310775  T
Q  118 tc 119  Q
    ||    
T  9310774 tc 9310773  T

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Target: scaffold0251 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 5003 - 4901
Alignment:
Q  18 ggagtatccatcaaattctggtttgattacaggagttgaaaccggagtaattggagactcgaaactgcggaaaaggatgcgatcgtgagaagatgaagtt 117  Q
    |||| ||||||| |||| ||||| ||| | |||| ||||||||||| | || ||||| |||||| ||| |||||||||  |||||||||||| |||| ||    
T  5003 ggagaatccatcgaattttggttcgatcaaaggatttgaaaccggaatgatcggagaatcgaaaatgccgaaaaggataggatcgtgagaagttgaattt 4904  T
Q  118 tcc 120  Q
    |||    
T  4903 tcc 4901  T

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Target: scaffold0251; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 4790 - 4737
Alignment:
Q  157 tcatcttcatcaatgtctgaatcgaaagcggaagcatcatcatcttcctcccta 210  Q
    ||||||||||| |   |||||||| |||||||||||||||||||||| ||||||    
T  4790 tcatcttcatcgagtgctgaatcggaagcggaagcatcatcatcttcatcccta 4737  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 18739966 - 18739930
Alignment:
Q  174 tgaatcgaaagcggaagcatcatcatcttcctcccta 210  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  18739966 tgaatcgaaagcggaagcatcaccatcttccttccta 18739930  T

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