View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6210_low_99 (Length: 217)

Name: NF6210_low_99
Description: NF6210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6210_low_99
NF6210_low_99
[»] chr7 (12 HSPs)
chr7 (17-198)||(30742467-30742651)
chr7 (59-129)||(48374435-48374505)
chr7 (49-130)||(25686830-25686911)
chr7 (54-118)||(6580009-6580073)
chr7 (49-121)||(27949377-27949449)
chr7 (50-122)||(36845494-36845566)
chr7 (49-121)||(27888386-27888458)
chr7 (50-118)||(39254188-39254256)
chr7 (49-121)||(46517395-46517467)
chr7 (49-129)||(6442269-6442349)
chr7 (49-118)||(11824175-11824242)
chr7 (59-108)||(7774958-7775007)
[»] chr5 (7 HSPs)
chr5 (49-120)||(28490727-28490798)
chr5 (49-103)||(25710494-25710548)
chr5 (49-103)||(43405497-43405551)
chr5 (52-129)||(5465648-5465725)
chr5 (65-126)||(6069132-6069191)
chr5 (49-103)||(10141998-10142052)
chr5 (60-129)||(30325871-30325939)
[»] chr2 (7 HSPs)
chr2 (49-126)||(12989295-12989372)
chr2 (49-121)||(38464267-38464339)
chr2 (65-124)||(32856136-32856195)
chr2 (46-104)||(10981619-10981677)
chr2 (49-121)||(9470185-9470256)
chr2 (59-117)||(17460980-17461038)
chr2 (49-121)||(14489543-14489615)
[»] chr3 (18 HSPs)
chr3 (51-121)||(41451899-41451969)
chr3 (49-121)||(52123960-52124032)
chr3 (59-121)||(24734819-24734881)
chr3 (49-118)||(20493452-20493521)
chr3 (49-121)||(37776707-37776779)
chr3 (65-117)||(43016533-43016585)
chr3 (64-120)||(49418424-49418480)
chr3 (59-122)||(8824982-8825045)
chr3 (60-129)||(20791411-20791480)
chr3 (65-121)||(5452066-5452122)
chr3 (49-129)||(14236123-14236203)
chr3 (49-108)||(29588750-29588809)
chr3 (49-95)||(2009098-2009144)
chr3 (49-120)||(752496-752565)
chr3 (46-122)||(2419467-2419543)
chr3 (65-121)||(15790374-15790430)
chr3 (49-129)||(39186068-39186148)
chr3 (49-129)||(50156656-50156736)
[»] scaffold0018 (1 HSPs)
scaffold0018 (49-129)||(27916-27996)
[»] chr8 (13 HSPs)
chr8 (49-121)||(16983498-16983570)
chr8 (49-118)||(6098784-6098853)
chr8 (59-127)||(4675020-4675088)
chr8 (59-121)||(34861196-34861258)
chr8 (49-118)||(24055932-24056001)
chr8 (73-121)||(5980007-5980055)
chr8 (49-121)||(35151733-35151805)
chr8 (49-108)||(4319750-4319809)
chr8 (59-118)||(36804846-36804905)
chr8 (49-103)||(32072201-32072255)
chr8 (49-121)||(13214599-13214671)
chr8 (73-121)||(13407327-13407375)
chr8 (61-117)||(31301230-31301286)
[»] chr6 (11 HSPs)
chr6 (49-121)||(34905440-34905512)
chr6 (49-129)||(16187430-16187508)
chr6 (49-129)||(32112712-32112793)
chr6 (49-124)||(16187653-16187726)
chr6 (49-117)||(8441857-8441925)
chr6 (49-117)||(8450661-8450729)
chr6 (49-108)||(12780776-12780835)
chr6 (59-121)||(1392741-1392803)
chr6 (60-129)||(21987407-21987476)
chr6 (59-103)||(445932-445976)
chr6 (49-121)||(16851977-16852049)
[»] chr4 (17 HSPs)
chr4 (49-121)||(8109060-8109132)
chr4 (49-121)||(24834682-24834754)
chr4 (65-129)||(38537509-38537573)
chr4 (49-119)||(754586-754656)
chr4 (49-118)||(722261-722330)
chr4 (49-126)||(40991588-40991665)
chr4 (54-129)||(19447241-19447316)
chr4 (49-121)||(20454642-20454714)
chr4 (49-121)||(26361312-26361384)
chr4 (50-121)||(31250886-31250958)
chr4 (50-92)||(50652369-50652411)
chr4 (88-129)||(5545722-5545763)
chr4 (52-121)||(52279263-52279332)
chr4 (65-129)||(1559910-1559974)
chr4 (88-124)||(19933477-19933513)
chr4 (49-121)||(24938419-24938491)
chr4 (46-118)||(49242271-49242343)
[»] chr1 (13 HSPs)
chr1 (65-129)||(21466616-21466680)
chr1 (59-121)||(8899128-8899190)
chr1 (59-126)||(25543453-25543520)
chr1 (59-121)||(26980266-26980328)
chr1 (49-107)||(33193154-33193212)
chr1 (49-121)||(11987730-11987802)
chr1 (49-129)||(19101597-19101677)
chr1 (59-121)||(16948533-16948595)
chr1 (59-121)||(41948150-41948212)
chr1 (67-124)||(6133626-6133683)
chr1 (49-129)||(15928659-15928737)
chr1 (49-122)||(32211787-32211860)
chr1 (49-121)||(30678915-30678987)
[»] scaffold0016 (1 HSPs)
scaffold0016 (50-130)||(204703-204783)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 30742651 - 30742467
Alignment:
Q  17 atgtaccacgtctttaagtggattacaat---aatgtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagag 113  Q
    ||||||||||||||||||||| ||  | |   ||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30742651 atgtaccacgtctttaagtgggttttatttctaatatgtagacctacaatgatttaaatcaataagaaaatgaatattagagtgagtgttcaaaatagag 30742552  T
Q  114 tgttgctaacactacttcaaaaacaattcgatgattaagttagctgattgaagatgcatcaaaatgacccaaaagataagcatag 198  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30742551 tgttgctaacactacttcaaaaacaattagatgattaagttagctgattgaagatgcatcaaaatgacccaaaagataagcatag 30742467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 48374505 - 48374435
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    ||||||||||||| ||| |||||| ||| |||||||| |||||||||||| |||||||||||| |||||||    
T  48374505 acaataatttaaaccaacaagagagtgagtattagagagagtgttcaaaagagagtgttgctagcactact 48374435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 25686911 - 25686830
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactactt 130  Q
    ||||||||| ||||| ||||||| |||||||| ||||| |||||||  || ||||||||| ||||||||||||||| |||||    
T  25686911 gtgtagacccacaatgatttaaaccaataagataatgagtattagaaagaatgttcaaaagagagtgttgctaacattactt 25686830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 6580073 - 6580009
Alignment:
Q  54 gacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttg 118  Q
    |||| ||||||||||||| |||||||||| ||| |||||||| |||||||||||| |||||||||    
T  6580073 gacccacaataatttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttg 6580009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 27949377 - 27949449
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||| ||||| |||||||  ||||||||| ||| |||||||| |||||||||||| ||||||||||||    
T  27949377 gtgtagacccacaatgatttaaactaataagagagtgagtattagagagagtgttcaaaagagagtgttgcta 27949449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 36845566 - 36845494
Alignment:
Q  50 tgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaa 122  Q
    |||||||| ||||| ||||||| |||||||||| ||||||||  || |||| |||||||||||||||||||||    
T  36845566 tgtagacccacaatgatttaaaccaataagagagtgaatattctagagagtattcaaaatagagtgttgctaa 36845494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 27888386 - 27888458
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||| ||||| ||||||| |||||||||| ||| | |||||| ||||| |||||| ||||||||||||    
T  27888386 gtgtagacccacaatgatttaaaccaataagagagtgagtgttagagagagtgctcaaaagagagtgttgcta 27888458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 39254188 - 39254256
Alignment:
Q  50 tgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttg 118  Q
    |||||||| |||||||||||||||||||||||| ||| | ||| || |||||||||||| ||| |||||    
T  39254188 tgtagacccacaataatttaaatcaataagagagtgagtgttaaagagagtgttcaaaagagaatgttg 39254256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 46517395 - 46517467
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||  ||||| ||||||| |||||||||||||| |||||||| |  ||||||||| ||||||||||||    
T  46517395 gtgtagactcacaatgatttaaaccaataagagaatgagtattagagaggctgttcaaaagagagtgttgcta 46517467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 6442269 - 6442349
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    ||||||||| ||||| ||||||| |||||| ||| ||| ||||| ||  ||||||||||| | ||||||||||||| ||||    
T  6442269 gtgtagacccacaatgatttaaaccaataaaagagtgagtattaaagatagtgttcaaaagaaagtgttgctaacattact 6442349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 11824175 - 11824242
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttg 118  Q
    ||||| ||| ||||| |||||||||||||||| | ||| |||||||  |||||||||||| |||||||||    
T  11824175 gtgtaaacccacaatgatttaaatcaataagaaagtgagtattaga--gagtgttcaaaagagagtgttg 11824242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 7774958 - 7775007
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaa 108  Q
    ||||| ||||||| |||||||||| | |||||||||| ||||||||||||    
T  7774958 acaatgatttaaaccaataagagagtaaatattagagagagtgttcaaaa 7775007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 28490798 - 28490727
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgct 120  Q
    ||||||||| ||||||||||||| |||||||||| ||| |||||||| |||||||||||| |||||||||||    
T  28490798 gtgtagacccacaataatttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgct 28490727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 25710548 - 25710494
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgtt 103  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| || |||||||    
T  25710548 gtgtagacccacaataatttaaaccaataagagaatgaatattaaagagagtgtt 25710494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 43405497 - 43405551
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgtt 103  Q
    ||||||||| ||||| |||||||||||||||||| ||||||| |||| |||||||    
T  43405497 gtgtagacccacaatgatttaaatcaataagagagtgaatatcagagggagtgtt 43405551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 5465725 - 5465648
Alignment:
Q  52 tagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    |||||| | ||| ||||||| |||||||||| |||||||||||   |||||||||   ||||||||||||||||||||    
T  5465725 tagacccataatgatttaaaccaataagagagtgaatattagaaaaagtgttcaatggagagtgttgctaacactact 5465648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 6069132 - 6069191
Alignment:
Q  65 atttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacact 126  Q
    ||||||||||| |||||| ||||||||| ||  ||||||||||||| |||||| ||||||||    
T  6069132 atttaaatcaacaagagagtgaatattaaag--agtgttcaaaatatagtgttactaacact 6069191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 10142052 - 10141998
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgtt 103  Q
    ||||||||| ||||| |||||||||||||||||| ||| | |||||| |||||||    
T  10142052 gtgtagaccaacaattatttaaatcaataagagagtgagtgttagagagagtgtt 10141998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 30325939 - 30325871
Alignment:
Q  60 caataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    |||| ||||||| |||||||| | ||| |||||||| |||||||||||| |||||| ||||| |||||||    
T  30325939 caatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtg-tgctagcactact 30325871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 12989295 - 12989372
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacact 126  Q
    ||||||||| ||||| ||||||| |||||||||| ||| |||||||| |||||||||||| |||||||||||| ||||    
T  12989295 gtgtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcact 12989372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 38464267 - 38464339
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||| ||||| ||||||| |||||||||| | | |||||||| |||||||||||| ||||| ||||||    
T  38464267 gtgtagacccacaatgatttaaaccaataagagagtaagtattagagagagtgttcaaaagagagtattgcta 38464339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 32856195 - 32856136
Alignment:
Q  65 atttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaaca 124  Q
    ||||||| |||||||||| ||| |||||||  | ||||||||||||||||||||||||||    
T  32856195 atttaaaccaataagagattgagtattagaaagggtgttcaaaatagagtgttgctaaca 32856136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 10981619 - 10981677
Alignment:
Q  46 aatgtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttc 104  Q
    |||||||||||| ||||| ||||||| |||||||||| ||| |||||||| ||||||||    
T  10981619 aatgtgtagacccacaatgatttaaaccaataagagagtgagtattagagggagtgttc 10981677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 9470185 - 9470256
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||| ||||| ||||||| |||||||||| |||||||||||| | || |||| || ||||||||||||    
T  9470185 gtgtagacccacaatgatttaaaccaataagagagtgaatattagagagggt-ttcagaagagagtgttgcta 9470256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 17460980 - 17461038
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgtt 117  Q
    |||||||||||||| ||||||||| |||||||||||| |||| || |||| ||| ||||    
T  17460980 acaataatttaaattaataagagagtgaatattagagagagtatttaaaaaagaatgtt 17461038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 14489615 - 14489543
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||| | ||||||||||||| |||||| ||||||| ||||||||  | | ||||||| ||||| ||||||    
T  14489615 gtgtagatccacaataatttaaaccaataaaagaatgagtattagagaaaattttcaaaagagagtcttgcta 14489543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 41451969 - 41451899
Alignment:
Q  51 gtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||| ||||| ||||||| |||||||||| ||| |||||||| |||||||||||| ||||||||||||    
T  41451969 gtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgcta 41451899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 52124032 - 52123960
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||| ||||| ||||||| |||||||| | ||| |||||||| |||||||||||| ||||||||||||    
T  52124032 gtgtagacccacaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtgttgcta 52123960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 24734819 - 24734881
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||| ||||||| |||||||||| ||| |||||||| |||||||||||| ||||||||||||    
T  24734819 acaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgcta 24734881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 20493521 - 20493452
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttg 118  Q
    ||||||||| ||||| ||||||| |||||||||| ||| || ||||| |||||||||||| |||||||||    
T  20493521 gtgtagacccacaatgatttaaaccaataagagagtgagtaatagagagagtgttcaaaagagagtgttg 20493452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 37776779 - 37776707
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||||||||| ||||||| || ||||||| ||| |||||||| | ||||||| || ||||||||||||    
T  37776779 gtgtagacctacaatgatttaaaccactaagagagtgagtattagagagggtgttcataaaagagtgttgcta 37776707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 43016533 - 43016585
Alignment:
Q  65 atttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgtt 117  Q
    |||||||||||||||||| ||| ||||| |||| |||||||||||||||||||    
T  43016533 atttaaatcaataagagagtgagtattacagtgggtgttcaaaatagagtgtt 43016585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 49418480 - 49418424
Alignment:
Q  64 aatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgct 120  Q
    ||||||||||||||||||| |||||| ||||| || ||||||||| |||||||||||    
T  49418480 aatttaaatcaataagagagtgaatactagagagaatgttcaaaagagagtgttgct 49418424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 8825045 - 8824982
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaa 122  Q
    ||||||||||||| |||||||||| ||| ||||| || |||||||||||| ||| |||||||||    
T  8825045 acaataatttaaaccaataagagagtgagtattaaagagagtgttcaaaacagaatgttgctaa 8824982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 20791411 - 20791480
Alignment:
Q  60 caataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    |||| ||||||| |||||||| | ||| |||||||| |||||||||||| |||||| ||||| |||||||    
T  20791411 caatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtggtgctagcactact 20791480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 5452122 - 5452066
Alignment:
Q  65 atttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||||||||||||  || |||| ||| |||||||||||| ||||||||||||    
T  5452122 atttaaatcaataagagagcgagtattggagagagtgttcaaaagagagtgttgcta 5452066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 14236123 - 14236203
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    ||||||| | ||||||||||| | |||||| | | ||| |||||||  |||||||||||| |||||||||||| |||||||    
T  14236123 gtgtagatccacaataatttagaccaataaaaaagtgagtattagaaagagtgttcaaaacagagtgttgctagcactact 14236203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 29588809 - 29588750
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaa 108  Q
    ||||||||| ||||| |||||||||||||||||| ||| | ||| || ||||||||||||    
T  29588809 gtgtagacccacaatgatttaaatcaataagagagtgagtgttatagagagtgttcaaaa 29588750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 2009098 - 2009144
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagag 95  Q
    ||||||||  |||||||||||||||||||| | ||||||||||||||    
T  2009098 gtgtagactcacaataatttaaatcaataaaaaaatgaatattagag 2009144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 752496 - 752565
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgct 120  Q
    ||||||||| ||||| |||||||  ||||||||||||| ||||| |  || ||||||||| |||||||||||    
T  752496 gtgtagacccacaatgatttaaactaataagagaatgagtattata--gactgttcaaaacagagtgttgct 752565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 2419543 - 2419467
Alignment:
Q  46 aatgtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaa 122  Q
    |||||||||||| ||||| ||||||| |||||||| | ||| ||||| ||  ||||||||||| | | |||||||||    
T  2419543 aatgtgtagacccacaatgatttaaaccaataagaaagtgagtattaaagaaagtgttcaaaaaacaatgttgctaa 2419467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 15790430 - 15790374
Alignment:
Q  65 atttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||| |||||||||| ||| |||||||| || | ||||||| ||||||||||||    
T  15790430 atttaaaccaataagagagtgagtattagagagattattcaaaaaagagtgttgcta 15790374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 39186068 - 39186148
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    ||||||| || |||| ||||||||||||||||||  |  |||| ||| |||| ||||||| ||||||||| || |||||||    
T  39186068 gtgtagatctgcaatgatttaaatcaataagagagagggtattggagagagtattcaaaagagagtgttgatagcactact 39186148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 50156736 - 50156656
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    ||||||||| ||||| ||||||| |||||||||| ||| ||||| |  |||||||||||| | ||||| | ||||| ||||    
T  50156736 gtgtagacccacaatgatttaaaccaataagagagtgagtattacaaagagtgttcaaaagaaagtgtcgataacattact 50156656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 27916 - 27996
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    ||||||||| ||||| ||||||| |||||||||| ||| ||||| || |||||||||||| || ||||||||| |||||||    
T  27916 gtgtagacccacaatgatttaaaccaataagagagtgagtattaaagagagtgttcaaaagagggtgttgctagcactact 27996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 16983498 - 16983570
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||  ||||| ||||||| |||||||||| ||| |||||||| |||||||||||| ||||||||||||    
T  16983498 gtgtagactcacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgcta 16983570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 6098853 - 6098784
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttg 118  Q
    ||||||| | |||||||||||||||||||||||| ||| |||||||| || |||| |||| |||||||||    
T  6098853 gtgtagatccacaataatttaaatcaataagagagtgagtattagagagaatgtttaaaagagagtgttg 6098784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 4675020 - 4675088
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacacta 127  Q
    ||||| ||||||| |||||| | |||||||||||||  |||||||||||||||||||||| | ||||||    
T  4675020 acaatgatttaaaccaataaaaaaatgaatattagaaagagtgttcaaaatagagtgttgttgacacta 4675088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 34861258 - 34861196
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||||||| |||||||||| ||| |||||| | | |||||||||| ||||||||||||    
T  34861258 acaataatttaaaccaataagagagtgagtattagggagggtgttcaaaagagagtgttgcta 34861196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 24056001 - 24055932
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttg 118  Q
    ||||||||| ||||| ||||||| |||||||||| ||| | ||||||  ||||||||||| |||||||||    
T  24056001 gtgtagacccacaattatttaaaccaataagagagtgagtgttagagaaagtgttcaaaagagagtgttg 24055932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 5980007 - 5980055
Alignment:
Q  73 caataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    |||||||||| ||| |||||||| |||||||||||| ||||||||||||    
T  5980007 caataagagagtgagtattagagagagtgttcaaaagagagtgttgcta 5980055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 35151805 - 35151733
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||| ||||||||| |||  ||||||| | ||||||||| |  |||||||||||| ||||||||||||    
T  35151805 gtgtagacccacaataattcaaactaataagaaagtgaatattaaatagagtgttcaaaagagagtgttgcta 35151733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 4319809 - 4319750
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaa 108  Q
    ||||||||||||| |||||||||||||||| | ||||||| |||||| || |||| ||||    
T  4319809 gtgtagacctacactaatttaaatcaataaaaaaatgaatgttagagagaatgttaaaaa 4319750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 36804905 - 36804846
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttg 118  Q
    |||||||||||||||||||||||| | | |||||||| || |||| |||| |||||||||    
T  36804905 acaataatttaaatcaataagagagtaagtattagagagaatgttgaaaagagagtgttg 36804846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 32072201 - 32072255
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgtt 103  Q
    ||||||||| ||||| |||||||||||||||||||||   ||||||| |||||||    
T  32072201 gtgtagacccacaattatttaaatcaataagagaatgggcattagagagagtgtt 32072255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 13214599 - 13214671
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||| |||||| | ||||  |||||||||  || |||||| | |||||||||||||||| ||||||||    
T  13214599 gtgtagacccacaatattataaactaataagagagcgagtattagggagagtgttcaaaatagaatgttgcta 13214671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 13407375 - 13407327
Alignment:
Q  73 caataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    |||| ||||||||| | |||||| |||||||||||| ||||||||||||    
T  13407375 caatgagagaatgagtgttagagagagtgttcaaaagagagtgttgcta 13407327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 31301230 - 31301286
Alignment:
Q  61 aataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgtt 117  Q
    ||||||||||| ||||||||||||||||||| |||  | ||| ||||| ||||||||    
T  31301230 aataatttaaaccaataagagaatgaatatttgagataatgtacaaaagagagtgtt 31301286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 34905440 - 34905512
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||| ||||| ||||||| |||||||||| ||| |||||||| | |||||||||| ||||||||||||    
T  34905440 gtgtagacccacaatgatttaaaccaataagagagtgagtattagagagggtgttcaaaagagagtgttgcta 34905512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 16187508 - 16187430
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    ||||||||||||||| ||||||| ||||||| || ||| |||||||  ||||||| |||| ||||||||||||||| ||||    
T  16187508 gtgtagacctacaattatttaaaccaataagcgagtgagtattaga--gagtgttgaaaagagagtgttgctaacattact 16187430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 32112793 - 32112712
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtg-ttgctaacactact 129  Q
    ||||||| | ||||| ||||||| |||||||||| |||||||||||| || ||||||||| |||||| |||||||| |||||    
T  32112793 gtgtagatccacaatgatttaaaacaataagagagtgaatattagagagaatgttcaaaagagagtgtttgctaactctact 32112712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 16187726 - 16187653
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaaca 124  Q
    ||||||||||||||| ||||||| ||||||| || ||| |||||||  ||||||| |||| |||||||||||||||    
T  16187726 gtgtagacctacaattatttaaaccaataagcgagtgagtattaga--gagtgttgaaaagagagtgttgctaaca 16187653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 8441925 - 8441857
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgtt 117  Q
    |||||||||| ||||||| |||| |||||| ||| ||| |||||||| |||||||||||| | ||||||    
T  8441925 gtgtagaccttcaataatctaaaccaataaaagagtgagtattagagagagtgttcaaaaaatagtgtt 8441857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 8450729 - 8450661
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgtt 117  Q
    |||||||||| ||||||| |||| |||||| ||| ||| |||||||| |||||||||||| | ||||||    
T  8450729 gtgtagaccttcaataatctaaaccaataaaagagtgagtattagagagagtgttcaaaaaatagtgtt 8450661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 12780835 - 12780776
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaa 108  Q
    ||||||| | ||||| ||||||| ||||||| ||||||||||||||| | ||||||||||    
T  12780835 gtgtagatccacaatgatttaaaccaataagggaatgaatattagagagggtgttcaaaa 12780776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 1392741 - 1392803
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||| ||||||| |||||||||| ||| |||||||  | |||||||||| ||||||||||||    
T  1392741 acaatgatttaaaccaataagagagtgagtattagatagggtgttcaaaagagagtgttgcta 1392803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 21987407 - 21987476
Alignment:
Q  60 caataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    |||| ||||||| |||||||| | ||| |||||||| |||||||||||| || ||| ||||| |||||||    
T  21987407 caatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagagggtggtgctagcactact 21987476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 445932 - 445976
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgtt 103  Q
    ||||| ||||||| |||||||||||||| |||||||| |||||||    
T  445932 acaatgatttaaaccaataagagaatgagtattagagagagtgtt 445976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 16852049 - 16851977
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||| ||||| ||||||| |||||||||| ||  |||||| | |  ||||||||| ||||||||||||    
T  16852049 gtgtagacccacaatgatttaaaccaataagagagtgggtattagggaggatgttcaaaagagagtgttgcta 16851977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 8109060 - 8109132
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||| ||||| ||||||| |||||||| | ||| |||||||| |||||||||||| ||||||||||||    
T  8109060 gtgtagacccacaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtgttgcta 8109132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 24834682 - 24834754
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||| ||||||||||||| |||||||||| ||| |||||||| ||| ||| |||| ||||||||||||    
T  24834682 gtgtagacccacaataatttaaaccaataagagagtgactattagagagagagtttaaaagagagtgttgcta 24834754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 38537573 - 38537509
Alignment:
Q  65 atttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    |||||||||||||| ||||||| |||||||| |||||||||||| | ||||||||||||| ||||    
T  38537573 atttaaatcaataaaagaatgattattagagagagtgttcaaaagaaagtgttgctaacattact 38537509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 754656 - 754586
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgc 119  Q
    ||||||||| ||||| ||||||| |||||||||| ||| |||||||| |||||||||||| | ||||||||    
T  754656 gtgtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagaaagtgttgc 754586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 722261 - 722330
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttg 118  Q
    ||||||||| ||||| ||||||| |||||||||| ||| |||||||| |||||||||||| | |||||||    
T  722261 gtgtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagaaagtgttg 722330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 40991665 - 40991588
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacact 126  Q
    ||||||||| ||||| ||||||| |||||| ||| ||| ||| |||| |||||||||||| | |||||||||||||||    
T  40991665 gtgtagacccacaatgatttaaaccaataaaagagtgagtatcagagagagtgttcaaaaaaaagtgttgctaacact 40991588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 19447241 - 19447316
Alignment:
Q  54 gacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    |||| ||||| |||||| ||||| ||||| ||| ||||| || |||||||||||| |||||||||||| |||||||    
T  19447241 gaccgacaatgatttaactcaattagagagtgagtattaaagagagtgttcaaaagagagtgttgctagcactact 19447316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 20454642 - 20454714
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||| | ||||| |||||||||||||| ||| ||| | |||||| |||||||||||| ||| ||||||||    
T  20454642 gtgtagatccacaatgatttaaatcaataacagagtgagtgttagagagagtgttcaaaagagaatgttgcta 20454714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 26361384 - 26361312
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||| | ||| ||||||| ||||||| || ||| |||||||| | |||||||||| ||||||||||||    
T  26361384 gtgtagacccataatgatttaaaccaataagtgagtgagtattagagagggtgttcaaaagagagtgttgcta 26361312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 31250958 - 31250886
Alignment:
Q  50 tgtagacctacaataatttaaatcaataagagaatgaata-ttagagtgagtgttcaaaatagagtgttgcta 121  Q
    |||||||| ||||| |||||||||||||| ||| | |||| |||||| |||| || |||||||||||||||||    
T  31250958 tgtagacccacaatgatttaaatcaataaaagagtaaatatttagagagagtatttaaaatagagtgttgcta 31250886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 50652411 - 50652369
Alignment:
Q  50 tgtagacctacaataatttaaatcaataagagaatgaatatta 92  Q
    ||||||| ||||||||||||||||||||||| | |||||||||    
T  50652411 tgtagacgtacaataatttaaatcaataagaaagtgaatatta 50652369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 5545722 - 5545763
Alignment:
Q  88 tattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    |||||||| |||||||||||| ||||||||||||| ||||||    
T  5545722 tattagagagagtgttcaaaagagagtgttgctaaaactact 5545763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 52279332 - 52279263
Alignment:
Q  52 tagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    |||||| ||||| ||||| ||||||| |||| |||||||||||  ||||||| |||| ||| ||||||||    
T  52279332 tagacccacaatgatttagatcaataggagagtgaatattagatagagtgtttaaaaaagaatgttgcta 52279263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 1559974 - 1559910
Alignment:
Q  65 atttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    ||||||| |||||||| | | |||||||| | |||||||||||||| ||||||| || |||||||    
T  1559974 atttaaaccaataagaaattcaatattagtgagagtgttcaaaataaagtgttgttagcactact 1559910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 19933513 - 19933477
Alignment:
Q  88 tattagagtgagtgttcaaaatagagtgttgctaaca 124  Q
    ||||| || ||||||||||||||||||||||||||||    
T  19933513 tattaaagagagtgttcaaaatagagtgttgctaaca 19933477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 24938491 - 24938419
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||||||||| ||||||| |||||||||| | | ||||||||  |||||| |||| | | ||||||||    
T  24938491 gtgtagacctacaatgatttaaaccaataagagagtaagtattagagaaagtgttgaaaagataatgttgcta 24938419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 49242271 - 49242343
Alignment:
Q  46 aatgtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttg 118  Q
    ||||||||||   ||||| ||||||| |||||||||||||| ||| | || ||||||| |||| |||||||||    
T  49242271 aatgtgtagattcacaatgatttaaaccaataagagaatgagtatcatagagagtgtttaaaagagagtgttg 49242343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 21466680 - 21466616
Alignment:
Q  65 atttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    |||||||||||||||| | |||||||||||| |||||||||||| |||||| ||||| |||||||    
T  21466680 atttaaatcaataagaaagtgaatattagagagagtgttcaaaagagagtggtgctagcactact 21466616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 8899128 - 8899190
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||||||| |||||||||| ||| |||||||| |||||||||||| ||| ||||||||    
T  8899128 acaataatttaaaccaataagagagtgagtattagagagagtgttcaaaagagattgttgcta 8899190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 25543453 - 25543520
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacact 126  Q
    ||||| ||||||| |||||||| | ||| |||||||| |||||||||||| |||||||| ||||||||    
T  25543453 acaatgatttaaaccaataagatagtgagtattagagagagtgttcaaaagagagtgttactaacact 25543520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 26980328 - 26980266
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||| |||||||||||||||||| ||| ||||| || ||||||| |||| ||||||||||||    
T  26980328 acaatgatttaaatcaataagagagtgagtattatagagagtgttgaaaagagagtgttgcta 26980266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 33193154 - 33193212
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaa 107  Q
    ||||||||| ||||| ||||||| |||||||||||||| ||||||||  ||||||||||    
T  33193154 gtgtagacccacaatgatttaaaccaataagagaatgagtattagagaaagtgttcaaa 33193212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 11987730 - 11987802
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||| ||||| ||||||| || ||||||| || ||||||||  ||||||| |||| ||||||||||||    
T  11987730 gtgtagacccacaatgatttaaaccattaagagagtggatattagaaagagtgtttaaaagagagtgttgcta 11987802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 19101677 - 19101597
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    ||||||| || |||| ||||||| |||||||| | ||| |||||||| |||||||||||| |||||  ||||| |||||||    
T  19101677 gtgtagatctgcaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtagtgctagcactact 19101597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 16948595 - 16948533
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||| |||||||||||||||||| ||| ||||||||  | ||||||| | ||||||||||||    
T  16948595 acaatgatttaaatcaataagagagtgagtattagagaaaatgttcaacagagagtgttgcta 16948533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 41948212 - 41948150
Alignment:
Q  59 acaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||| |||||||||||||||||| ||| | |||||| |||||||||||| ||| | ||||||    
T  41948212 acaatgatttaaatcaataagagagtgagtgttagagagagtgttcaaaagagaatattgcta 41948150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 6133683 - 6133626
Alignment:
Q  67 ttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaaca 124  Q
    ||||| |||||||||| ||| |||||||| |  ||||||||| |||||||||||||||    
T  6133683 ttaaaccaataagagagtgagtattagagaggatgttcaaaagagagtgttgctaaca 6133626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 15928659 - 15928737
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactact 129  Q
    |||||||| |||| | ||||||| |||||| ||| ||| ||||||||  ||||||||||| ||||||||| || |||||||    
T  15928659 gtgtagacttacagtgatttaaaccaataaaagagtgagtattagag--agtgttcaaaagagagtgttggtagcactact 15928737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 32211860 - 32211787
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaa 122  Q
    ||||||||| ||||| ||||||| |||||||||| |||  |||| ||  |||||| |||| |||||||||||||    
T  32211860 gtgtagacccacaatgatttaaaccaataagagagtgatcattaaagaaagtgttgaaaagagagtgttgctaa 32211787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 30678987 - 30678915
Alignment:
Q  49 gtgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgcta 121  Q
    ||||||||  ||||| ||||||  |||||||||| ||| | |||||| ||||| |||||| ||||||||||||    
T  30678987 gtgtagactcacaatgatttaagccaataagagagtgagtgttagagagagtgctcaaaaaagagtgttgcta 30678915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 204783 - 204703
Alignment:
Q  50 tgtagacctacaataatttaaatcaataagagaatgaatattagagtgagtgttcaaaatagagtgttgctaacactactt 130  Q
    ||||||| |||||| || |||| |||||| ||| ||| || ||||| || ||||||||| |||||||||||| || |||||    
T  204783 tgtagacttacaattatataaaccaataaaagagtgagtactagagagaatgttcaaaaaagagtgttgctagcattactt 204703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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