View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6211_high_11 (Length: 351)
Name: NF6211_high_11
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6211_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 51362012 - 51361784
Alignment:
| Q |
19 |
tttcctgtcgtcattaattttcatgcaaggaagtcttgagtgagtgaccattataaaagtacatatttgttacgcattacacaattaacatatatagcca |
118 |
Q |
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| T |
51362012 |
tttcctgtcgtcattaattttcatgcaaggaagtcttgagtgagtgaccattataaaagtacatatttgttacgcattacacaattaacatatatagcca |
51361913 |
T |
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| Q |
119 |
ccaatacagtcatcctttcaggaaagttattcccttcaaccctcagccatggtaactatctgctcatctcgtgcaccataatatagagagtgttcatgtt |
218 |
Q |
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| T |
51361912 |
ccaatacagtcatcctttcaggaaagttattcccttccaccctcagccatggtaactatctgctcatctcgtgcaccataatat--agagtgttcatgtt |
51361815 |
T |
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| Q |
219 |
aacatgtttaatgtgttttcccctacttaaa |
249 |
Q |
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|||||||||||| |||||||||||||||||| |
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| T |
51361814 |
aacatgtttaatatgttttcccctacttaaa |
51361784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 247 - 349
Target Start/End: Complemental strand, 51361735 - 51361633
Alignment:
| Q |
247 |
aaacattgttcaaaaaatattctgcatgaccattattttagctatctatacaaacaccttggttggttgtgttttcttagaattttgatttcttctcact |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |
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| T |
51361735 |
aaacattgttcaaaaaatattctgcatgaccattattttagctatctatacaaacaccttggttggttgtgttttctttgaattttgatttcttttaact |
51361636 |
T |
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| Q |
347 |
cga |
349 |
Q |
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| T |
51361635 |
cga |
51361633 |
T |
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