View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6211_high_16 (Length: 309)
Name: NF6211_high_16
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6211_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 34943102 - 34943389
Alignment:
| Q |
1 |
tgacaaagttccacaacccatttaacacacaatgttatcaacggaggatcgcggacagctaaagatccaccataaaacgccatgatggataccgccatcc |
100 |
Q |
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| T |
34943102 |
tgacaaagttccacaacccatttaacacacaatgttatcaacggaggatcgcggacagctaaagatccaccataaaacgccatgatggataccgccatcc |
34943201 |
T |
|
| Q |
101 |
ttcacaaattggccatggaggttgtcaaataatccgccatggccaatacttgacaacactattaacacattcaccctcacatatcaattatctgatttaa |
200 |
Q |
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| T |
34943202 |
ttcacaaattggccatggaggttgtcaaataatccgccatggccaatacttgacaacactgttaacacattcaccctcacatatcaattatctgatttaa |
34943301 |
T |
|
| Q |
201 |
caacctacccctcaaactgaacaaaaatgtcttccagttatcaacacaacaagctcaatacagcttaggaacatagataaaccattta |
288 |
Q |
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| T |
34943302 |
caacctacccctcaaactgaacaaaaatgtcttccagttatcaacacaacaagctcaatacagcttaggaacatagataaaccattta |
34943389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 11239043 - 11238995
Alignment:
| Q |
91 |
accgccatccttcacaaattggccatggaggttgtcaaataatccgcca |
139 |
Q |
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| T |
11239043 |
accgccatccttcacaaattggtcatggcggttgtaaaaaaatctgcca |
11238995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 20642838 - 20642880
Alignment:
| Q |
97 |
atccttcacaaattggccatggaggttgtcaaataatccgcca |
139 |
Q |
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| T |
20642838 |
atccttcccaaattggccatgaaggttgtcaaaaaatccgcca |
20642880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 21523494 - 21523453
Alignment:
| Q |
97 |
atccttcacaaattggccatggaggttgtcaaataatccgcc |
138 |
Q |
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| T |
21523494 |
atccttcccaaattggccatgaaggttgtcaaaaaatccgcc |
21523453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 21534060 - 21534019
Alignment:
| Q |
97 |
atccttcacaaattggccatggaggttgtcaaataatccgcc |
138 |
Q |
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| T |
21534060 |
atccttcccaaattggccatgaaggttgtcaaaaaatccgcc |
21534019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 28344665 - 28344709
Alignment:
| Q |
95 |
ccatccttcacaaattggccatggaggttgtcaaataatccgcca |
139 |
Q |
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| T |
28344665 |
ccatccttcacaaattggccgtggcggttgtaaaaaaatccgcca |
28344709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 4182442 - 4182410
Alignment:
| Q |
131 |
aatccgccatggccaatacttgacaacactatt |
163 |
Q |
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| T |
4182442 |
aatccgccatggccaatatttgacaacactatt |
4182410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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