View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6211_high_23 (Length: 229)

Name: NF6211_high_23
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6211_high_23
NF6211_high_23
[»] chr4 (5 HSPs)
chr4 (1-209)||(3746251-3746459)
chr4 (18-76)||(13538252-13538310)
chr4 (17-85)||(31351661-31351729)
chr4 (35-74)||(38415494-38415533)
chr4 (17-74)||(35010382-35010439)
[»] chr8 (3 HSPs)
chr8 (1-84)||(1028752-1028836)
chr8 (17-72)||(28300139-28300194)
chr8 (40-84)||(19756417-19756461)
[»] chr7 (5 HSPs)
chr7 (40-76)||(27227261-27227297)
chr7 (18-76)||(9667228-9667286)
chr7 (18-80)||(23982068-23982130)
chr7 (18-75)||(24250144-24250201)
chr7 (40-76)||(47684484-47684520)
[»] chr1 (1 HSPs)
chr1 (21-84)||(2098801-2098864)
[»] chr3 (2 HSPs)
chr3 (40-85)||(52910376-52910421)
chr3 (40-76)||(11988928-11988964)
[»] chr2 (2 HSPs)
chr2 (40-85)||(37123631-37123676)
chr2 (40-76)||(8915639-8915675)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3746459 - 3746251
Alignment:
Q  1 ttatgtgtaggggtgaggttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactagattacctgatnnnnnnntcttttgt 100  Q
    ||||||||||||||||||||||||||| | |||| ||||||||||| | ||||||||| | ||||||||| |||| |||| ||||       ||||||||    
T  3746459 ttatgtgtaggggtgaggttcgaaccccggatttcccatttctccacatataatgtgtgtaaatctagccgctaggttacttgataaaaaaatcttttgt 3746360  T
Q  101 cctttttagttcacttttctccctctatatttggtgtcttataaacaaacccctcttagctacacttcattcatcttccattattctcttctctccttca 200  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3746359 cctttttagttcacttttctccctctatacttgttgtcttataaacaaacccctcttggctacacttcattcatcttccattattctcttctctccttca 3746260  T
Q  201 ctactttgg 209  Q
    ||| |||||    
T  3746259 ctattttgg 3746251  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 13538310 - 13538252
Alignment:
Q  18 gttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactaga 76  Q
    ||||||||||   |||| ||| ||||||||||||||||||| |||||||||||||||||    
T  13538310 gttcgaaccccaaatttcccacttctccatacataatgtgtgtgaatctagccactaga 13538252  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 31351729 - 31351661
Alignment:
Q  17 ggttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactagattacctgat 85  Q
    ||||||||| | | |||| ||||||||||| ||||||| ||| ||||||||||||||||| ||| ||||    
T  31351729 ggttcgaactccggatttcccatttctccacacataatatgtgtgaatctagccactagactacttgat 31351661  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 38415533 - 38415494
Alignment:
Q  35 tccatttctccatacataatgtgtttgaatctagccacta 74  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  38415533 tccatttcttcatacataatgtgtgtgaatctagccacta 38415494  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 35010439 - 35010382
Alignment:
Q  17 ggttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccacta 74  Q
    ||||||||| | | |||| ||| ||||||| ||||||||||| |||||||||||||||    
T  35010439 ggttcgaactccggatttcccacttctccacacataatgtgtatgaatctagccacta 35010382  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 1028752 - 1028836
Alignment:
Q  1 ttatgtgtagggg-tgaggttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactagattacctga 84  Q
    ||||||| ||||| |||||||||||| | | ||| | || |||| |||||||||||||| ||||||||||||||||| |||||||    
T  1028752 ttatgtgcaggggctgaggttcgaactccggattcttcacttcttcatacataatgtgtgtgaatctagccactagactacctga 1028836  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 28300139 - 28300194
Alignment:
Q  17 ggttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccac 72  Q
    ||||||||||| | |||  ||| ||||||||||||||||||| |||||||||||||    
T  28300139 ggttcgaaccccggattccccacttctccatacataatgtgtgtgaatctagccac 28300194  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 19756461 - 19756417
Alignment:
Q  40 ttctccatacataatgtgtttgaatctagccactagattacctga 84  Q
    ||||||| ||||||||||| ||||||||||||||||  |||||||    
T  19756461 ttctccacacataatgtgtgtgaatctagccactaggctacctga 19756417  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 27227297 - 27227261
Alignment:
Q  40 ttctccatacataatgtgtttgaatctagccactaga 76  Q
    ||||||| |||||||||||||||||||||||||||||    
T  27227297 ttctccacacataatgtgtttgaatctagccactaga 27227261  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 9667286 - 9667228
Alignment:
Q  18 gttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactaga 76  Q
    ||||||||||   |||| ||| ||||||||||||||||||| |||||| ||||||||||    
T  9667286 gttcgaaccccaaatttcccacttctccatacataatgtgtgtgaatccagccactaga 9667228  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 23982068 - 23982130
Alignment:
Q  18 gttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactagattac 80  Q
    |||||||| | | ||| ||||||||||   ||||||||||| |||||||||||||||||||||    
T  23982068 gttcgaactccggattctccatttctctgcacataatgtgtgtgaatctagccactagattac 23982130  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 24250201 - 24250144
Alignment:
Q  18 gttcgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactag 75  Q
    |||||||||||| ||| |||| || |||| ||||||||||| ||||||||| ||||||    
T  24250201 gttcgaaccctggattctccacttttccacacataatgtgtgtgaatctagtcactag 24250144  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 47684520 - 47684484
Alignment:
Q  40 ttctccatacataatgtgtttgaatctagccactaga 76  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  47684520 ttctccatacataatgtgtgtgaatctagccaataga 47684484  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 2098801 - 2098864
Alignment:
Q  21 cgaaccctgtattttccatttctccatacataatgtgtttgaatctagccactagattacctga 84  Q
    ||||||| | ||| |||| ||||||| | ||||||||| |||||||||||||||||||| ||||    
T  2098801 cgaaccccggattctccacttctccacatataatgtgtgtgaatctagccactagattatctga 2098864  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 52910421 - 52910376
Alignment:
Q  40 ttctccatacataatgtgtttgaatctagccactagattacctgat 85  Q
    ||||||| ||||||||||| ||||||||| ||||||| ||||||||    
T  52910421 ttctccacacataatgtgtgtgaatctagtcactagactacctgat 52910376  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 11988964 - 11988928
Alignment:
Q  40 ttctccatacataatgtgtttgaatctagccactaga 76  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  11988964 ttctccacacataatgtgtgtgaatctagccactaga 11988928  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 37123631 - 37123676
Alignment:
Q  40 ttctccatacataatgtgtttgaatctagccactagattacctgat 85  Q
    ||||||| ||||||||||| ||||||||||||||||| ||| ||||    
T  37123631 ttctccacacataatgtgtgtgaatctagccactagactacttgat 37123676  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 8915639 - 8915675
Alignment:
Q  40 ttctccatacataatgtgtttgaatctagccactaga 76  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  8915639 ttctccataaataatgtgtgtgaatctagccactaga 8915675  T

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