View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6211_high_3 (Length: 677)
Name: NF6211_high_3
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6211_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 22 - 667
Target Start/End: Original strand, 46959381 - 46960024
Alignment:
| Q |
22 |
ctataatattaatgaaggatatgttcgccacttgaacagctgaagtctgcatcacaattcaggacattattacattcttacagnnnnnnntcttcagttg |
121 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
46959381 |
ctataatattaatgaaggatatgttcaccacttgaacagctgaagtctgcatcacaattcaggacattattacattcttacagaaaaaaatcatcagttg |
46959480 |
T |
|
| Q |
122 |
aattaaaatcattatgaaagttcattaatttgaatccttgtaggagattgacaagaatgtatgtcactgacatacatgattataatcgatgaaaattatg |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
46959481 |
aattaaaatcattatgaaagttcattaatttgaatccttgtaggagattgacaagaatgtatgtcactgacat----gattataattgatgaaaattatg |
46959576 |
T |
|
| Q |
222 |
aaatcagctattatattctacaaatcataaagacaattcaaaactatattggctatctcctcagataaataaatacaactattaataatgtgtcactgca |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46959577 |
aaatcagctattatattctacaaatcataaagacaattcaaaactatattggctatctcctcagataaataaatacaactattaataatgtgtcactgca |
46959676 |
T |
|
| Q |
322 |
tgcacatgtagacttacaaaacgaccctgcaaaaatatcttaaaattcaatacctgattcttgcatggaattcgggaatcacagtagtattgatcaatta |
421 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46959677 |
tgcacatgtagacttgcaaaatgaccctgcaaaaatatcttaaaattcaatacctgattcttgcatggaagtcgggaatcacagtagtattgatcaatta |
46959776 |
T |
|
| Q |
422 |
ttattggattggacacattttccaccacgatatcctgaaatgtgatattggaggcaagaccatgcccaccctaaagaaaatttaacttgactcaatcaaa |
521 |
Q |
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| T |
46959777 |
ttattggattggacacattttccatcacgatatcctgaaatgtgatattggaggcaagaccatgcccaccctaaagaaaatttaacttgactcaatcaaa |
46959876 |
T |
|
| Q |
522 |
ttgaacattactgggtgacatttaatgagaatgaaaatgctaaggttaccaacttacctgccatgttttgattctcagcccatttttcgtgttcgtaaga |
621 |
Q |
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| T |
46959877 |
ttgaacattactgggtgacatttaatgagaatgaaaatgctaaggttaccaacttacctgccatgttttgattctcagcccatttttcgtgttcgtaaga |
46959976 |
T |
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| Q |
622 |
taagctcc--atatacatttacattttcaatcttctcccatgcctttg |
667 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46959977 |
taagctccatatatacatttacattttcaatcttctcccatgcctttg |
46960024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 345 - 660
Target Start/End: Complemental strand, 44522455 - 44522137
Alignment:
| Q |
345 |
accctgcaaaaatatcttaaaattcaatacctgattcttgcatggaattcgggaatcacagtagtattgatcaattattattggattggacacattttcc |
444 |
Q |
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| T |
44522455 |
accctgcaaaaatatcttaaaattcaatacctgattcttgcatggatgtcgtgaatcgcagtagtattgatctattattattggattggacacattttcc |
44522356 |
T |
|
| Q |
445 |
accacgatatcctgaaatgtgatattggaggcaagaccatgcccaccctaaagaaaatttaacttgactcaatcaaattgaacattactgggtgacattt |
544 |
Q |
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| T |
44522355 |
attaagatattctggaatgtgatcttggaggcaaaaccactcccaccctaaagaaaatttggctcgactcaatagacttg-tcatcactaggtgaaatag |
44522257 |
T |
|
| Q |
545 |
aatgagaatgaaaatgctaaggttac----caacttacctgccatgttttgattctcagcccatttttcgtgttcgtaagataagctccatatacattta |
640 |
Q |
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|||||||||||||||| || |||||| || |||||||||||||||||||||||| |||||| | ||||| |||||||||||||| ||| ||| |
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| T |
44522256 |
aatgagaatgaaaatgatacggttacgaagaaagttacctgccatgttttgattctcaccccattatcagtgttgtaaagataagctccatcaacaatta |
44522157 |
T |
|
| Q |
641 |
cattttcaatcttctcccat |
660 |
Q |
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|||||| ||||||||||||| |
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| T |
44522156 |
cattttgaatcttctcccat |
44522137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 44522734 - 44522569
Alignment:
| Q |
26 |
aatattaatgaaggatatgttcgccacttgaacagctgaagtctgcatcacaattcaggacattattacattcttacagnnnnnnntcttcagttgaatt |
125 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| || || |||| ||| |||||| |||||||||||||| |
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| T |
44522734 |
aatattaatgaaggatatgttccccacttgaacagctgaagtctgcatcacaatgcattac---attaaatttttacagcataatatcttcagttgaatt |
44522638 |
T |
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| Q |
126 |
aaaatcattatgaaagttcattaatttgaatccttgtaggagatt-gacaagaatgtatgtcactgacat |
194 |
Q |
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|||| || |||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |
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| T |
44522637 |
-aaattatcatgaaacttcattaatttgaatccttgttggagattcgacaggaatgtatgtcactgacat |
44522569 |
T |
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Back To:
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