View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6211_high_4 (Length: 674)

Name: NF6211_high_4
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6211_high_4
NF6211_high_4
[»] chr7 (5 HSPs)
chr7 (268-662)||(41099431-41099830)
chr7 (19-187)||(41099178-41099350)
chr7 (591-629)||(6091330-6091368)
chr7 (595-627)||(17285069-17285101)
chr7 (595-623)||(30516379-30516407)
[»] chr6 (6 HSPs)
chr6 (595-627)||(1893391-1893423)
chr6 (595-626)||(33135838-33135869)
chr6 (595-625)||(6299519-6299549)
chr6 (595-625)||(6306329-6306359)
chr6 (591-629)||(15443698-15443736)
chr6 (597-625)||(19602205-19602233)
[»] scaffold0037 (1 HSPs)
scaffold0037 (595-625)||(102912-102942)
[»] chr8 (1 HSPs)
chr8 (591-625)||(9936821-9936855)
[»] chr3 (2 HSPs)
chr3 (595-625)||(40150593-40150623)
chr3 (597-625)||(25652055-25652083)
[»] chr1 (1 HSPs)
chr1 (595-629)||(3921670-3921704)
[»] chr5 (1 HSPs)
chr5 (597-625)||(25863211-25863239)
[»] chr4 (1 HSPs)
chr4 (591-627)||(25390904-25390940)
[»] chr2 (1 HSPs)
chr2 (597-625)||(25544488-25544516)


Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 268 - 662
Target Start/End: Original strand, 41099431 - 41099830
Alignment:
Q  268 aggttgattatgtaggttgtgattgagctgtttattggtctgttgctttgtttttgggctgctcttactgttcctggcaagtttttgtccatacaccctc 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41099431 aggttgattatgtaggttgtgattgagctgtttattggtctgttgctttgtttttgggctgctcttactgttcctggcaagtttttgtccatacaccctc 41099530  T
Q  368 actctgatgagaacaggtttcttcttactaccattccaataannnnnnnn-agggtttttgctcttgttctgtgtgtttgtttgga----tataagtagt 462  Q
    |||||||||||||||||||||||||||||||||||| |||||         |||||||||||||||||||||||||||||||||||    ||||||||||    
T  41099531 actctgatgagaacaggtttcttcttactaccattctaataatttttttttagggtttttgctcttgttctgtgtgtttgtttggatggatataagtagt 41099630  T
Q  463 tggtatttggtttgaaagatttacttttatgttagagagtgacccctgtaggaccgacacttctaattgaaggcgtgtcgatacgtgtcagtttttgact 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41099631 tggtatttggtttgaaagatttacttttatgttagagagtgacccctgtagcaccgacacttctaattgaaggcgtgtcgatacgtgtcagtttttgact 41099730  T
Q  563 ctggcacgacattgacacatgtatttgtttatattgaattatatcattttctcaaattattattgatttcaatgttgtatccggcgtccatgtctgtgct 662  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41099731 ctggcatgacattgacacatgtatttgtttatattgaattatatcattttctcaaattattattgatttcaatgttgtatccggcgtccatgtctgtgct 41099830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 41099178 - 41099350
Alignment:
Q  19 atttcacgccgcttattcaaccatccaatgtattcttcacnnnnnnnnn---gttgctttt-atgctacttcgtttcatctttctacgctttcttaattt 114  Q
    ||||||||||||||||||||||||||||||||||||||||            ||||||||| |||||||||||||||||||||||||||||||||||| |    
T  41099178 atttcacgccgcttattcaaccatccaatgtattcttcacttttttttttttgttgctttttatgctacttcgtttcatctttctacgctttcttaatct 41099277  T
Q  115 gttttaatcttatttattttgttgcagataagagcttgttgaagattactgaagatgagtttacagcaccccc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41099278 gttttaatcttatttattttgttgcagataagagcttgttgaagattactgaagatgagtttacagcaccccc 41099350  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 591 - 629
Target Start/End: Complemental strand, 6091368 - 6091330
Alignment:
Q  591 ttatattgaattatatcattttctcaaattattattgat 629  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  6091368 ttatattgaattatatcattttctcaaaattttattgat 6091330  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 595 - 627
Target Start/End: Complemental strand, 17285101 - 17285069
Alignment:
Q  595 attgaattatatcattttctcaaattattattg 627  Q
    |||||||||||||||| ||||||||||||||||    
T  17285101 attgaattatatcattctctcaaattattattg 17285069  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 595 - 623
Target Start/End: Original strand, 30516379 - 30516407
Alignment:
Q  595 attgaattatatcattttctcaaattatt 623  Q
    |||||||||||||||||||||||||||||    
T  30516379 attgaattatatcattttctcaaattatt 30516407  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 627
Target Start/End: Original strand, 1893391 - 1893423
Alignment:
Q  595 attgaattatatcattttctcaaattattattg 627  Q
    |||||||||||||||||||||||||||||||||    
T  1893391 attgaattatatcattttctcaaattattattg 1893423  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 626
Target Start/End: Complemental strand, 33135869 - 33135838
Alignment:
Q  595 attgaattatatcattttctcaaattattatt 626  Q
    ||||||||||||||||||||||||||||||||    
T  33135869 attgaattatatcattttctcaaattattatt 33135838  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 625
Target Start/End: Complemental strand, 6299549 - 6299519
Alignment:
Q  595 attgaattatatcattttctcaaattattat 625  Q
    |||||||||||||||||||||||||||||||    
T  6299549 attgaattatatcattttctcaaattattat 6299519  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 625
Target Start/End: Complemental strand, 6306359 - 6306329
Alignment:
Q  595 attgaattatatcattttctcaaattattat 625  Q
    |||||||||||||||||||||||||||||||    
T  6306359 attgaattatatcattttctcaaattattat 6306329  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 591 - 629
Target Start/End: Complemental strand, 15443736 - 15443698
Alignment:
Q  591 ttatattgaattatatcattttctcaaattattattgat 629  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  15443736 ttatattgaattatgttattttctcaaattattattgat 15443698  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 597 - 625
Target Start/End: Original strand, 19602205 - 19602233
Alignment:
Q  597 tgaattatatcattttctcaaattattat 625  Q
    |||||||||||||||||||||||||||||    
T  19602205 tgaattatatcattttctcaaattattat 19602233  T

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Target: scaffold0037 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 625
Target Start/End: Complemental strand, 102942 - 102912
Alignment:
Q  595 attgaattatatcattttctcaaattattat 625  Q
    |||||||||||||||||||||||||||||||    
T  102942 attgaattatatcattttctcaaattattat 102912  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 591 - 625
Target Start/End: Complemental strand, 9936855 - 9936821
Alignment:
Q  591 ttatattgaattatatcattttctcaaattattat 625  Q
    |||||||||||||||||||||||| ||||||||||    
T  9936855 ttatattgaattatatcattttcttaaattattat 9936821  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 625
Target Start/End: Original strand, 40150593 - 40150623
Alignment:
Q  595 attgaattatatcattttctcaaattattat 625  Q
    |||||||||||||||||||||||||||||||    
T  40150593 attgaattatatcattttctcaaattattat 40150623  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 597 - 625
Target Start/End: Original strand, 25652055 - 25652083
Alignment:
Q  597 tgaattatatcattttctcaaattattat 625  Q
    |||||||||||||||||||||||||||||    
T  25652055 tgaattatatcattttctcaaattattat 25652083  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 629
Target Start/End: Complemental strand, 3921704 - 3921670
Alignment:
Q  595 attgaattatatcattttctcaaattattattgat 629  Q
    |||||||||| ||||||||||||||||||||||||    
T  3921704 attgaattatgtcattttctcaaattattattgat 3921670  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 597 - 625
Target Start/End: Complemental strand, 25863239 - 25863211
Alignment:
Q  597 tgaattatatcattttctcaaattattat 625  Q
    |||||||||||||||||||||||||||||    
T  25863239 tgaattatatcattttctcaaattattat 25863211  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 627
Target Start/End: Original strand, 25390904 - 25390940
Alignment:
Q  591 ttatattgaattatatcattttctcaaattattattg 627  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  25390904 ttatattgaattatgtcattttctaaaattattattg 25390940  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 597 - 625
Target Start/End: Complemental strand, 25544516 - 25544488
Alignment:
Q  597 tgaattatatcattttctcaaattattat 625  Q
    |||||||||||||||||||||||||||||    
T  25544516 tgaattatatcattttctcaaattattat 25544488  T

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