View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6211_high_8 (Length: 409)
Name: NF6211_high_8
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6211_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 40629767 - 40629364
Alignment:
| Q |
1 |
cagagctgaggtcgcatggctagctttgcagtagattgggtggtatcaggggttgctaaaatcctgattgaagagtatgcggtgttgggggatgcagcga |
100 |
Q |
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| T |
40629767 |
cagagctgaggttgcatggctagctttgcagtagattgggtggtatcaggggttgctaaaatcctgattgaagagtatgcggtgttgggggatgcagcga |
40629668 |
T |
|
| Q |
101 |
gacacgtagaatggattgagaaagagctgaggtcaatgatgggattgttagagcagattgaacaacgcggggaaggcgaacaggaacaagcgttgcgaga |
200 |
Q |
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| T |
40629667 |
gacacgtagaatggattgagaaagagctgaggtcaatgatgggattgttagagcagattgaacaacgcggggaaggcgaacaggaacaagcgttgcgaga |
40629568 |
T |
|
| Q |
201 |
atgggcagagaagttgaaagatgttgc-------gcaaaggacgtgatagatacgtttgtgataaaatcagtgaagaggaggaggtggggagttttgcat |
293 |
Q |
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| T |
40629567 |
atgggcagagaagttgaaagatgttgctttggatgcaaaggacgtgatagatacgtttgtgataaaatcagtgaagaggaggaggtggggagttttgcat |
40629468 |
T |
|
| Q |
294 |
tggtatgacaaatacaaggttggaaaagagctggagaagatccgaaagaggatgagagatatctctcagaaaataatgaacttaaatttggatgttagta |
393 |
Q |
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| T |
40629467 |
tggtatgacaaatacaaggttggaaaagagctggagaagatccgaaagaggatgagagatatctctcagaaaataatgaacttaaatttggatgttagta |
40629368 |
T |
|
| Q |
394 |
tctc |
397 |
Q |
| |
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|||| |
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| T |
40629367 |
tctc |
40629364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 40 - 399
Target Start/End: Original strand, 40635407 - 40635773
Alignment:
| Q |
40 |
gtggtatcaggggttgctaaaatcctgattgaagagtatgcggtgttgggggatgcagcgagacacgtagaatggattgagaaagagctgaggtcaatga |
139 |
Q |
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| T |
40635407 |
gtggtatcagtggttgcaaaattcctggttgaagagtatgcagttttgggggctacagcgaggcacgtagaatggattgagaaagagctgaggtcaatgc |
40635506 |
T |
|
| Q |
140 |
tgggattgttagagcagattgaacaacgcggggaaggcgaacaggaacaagcgttgcgagaatgggcagagaagttgaaagatgttgc-------gcaaa |
232 |
Q |
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| T |
40635507 |
ggggattgttagaacaggttgagcagcgcggggatggagaacaggaacaagagttgaaagaatgggcggagaagttgaaggatgttgctctagatgcaaa |
40635606 |
T |
|
| Q |
233 |
ggacgtgatagatacgtttgtgataaaatcagtgaagaggaggaggtggggagttttgcattggtatgacaaatacaaggttggaaaagagctggagaag |
332 |
Q |
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| T |
40635607 |
gaatgtgatagaaacgttcgtcatcaaatcagtcaagaggaggaggtggggtgttttgcattggtatgataaatacaaagttggaaaagagctggaggag |
40635706 |
T |
|
| Q |
333 |
atccgaaagaggatgagagatatctctcagaaaataatgaacttaaatttggatgttagtatctctg |
399 |
Q |
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| T |
40635707 |
atccgaaagaggatgagagacatctctcagaaaataatgaatttaaacttggatgttagtgtctctg |
40635773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 58 - 363
Target Start/End: Original strand, 40656004 - 40656319
Alignment:
| Q |
58 |
aaaatcctgattgaagagtatgcggtgttgggggatg---cagcgagacacgtagaatggattgagaaagagctgaggtcaatgatgggattgttagagc |
154 |
Q |
| |
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||||||||||||||||||||||| |||||||| | || || || ||||||||||||||||| | |||||||||||||||| ||||||||| || | |
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| T |
40656004 |
aaaatcctgattgaagagtatgcagtgttgggtggtgggacaattaggcacgtagaatggattgaaagagagctgaggtcaatgcagggattgttggaac |
40656103 |
T |
|
| Q |
155 |
agattgaacaacgcggggaaggcgaacaggaacaagcgttgcgagaatgggcagagaagttgaaagatgttgc-------gcaaaggacgtgatagatac |
247 |
Q |
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|| | || || | | | || ||||| ||||||| ||| || |||| |||||||||||| || ||||| ||| |||| |||||||| || |
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| T |
40656104 |
aggccgggcagcgtgcgtacggagaacaagaacaagagtttaatgagtgggaagagaagttgaaggaagttgctggtgatgcagaggatgtgatagaaac |
40656203 |
T |
|
| Q |
248 |
gtttgtgataaaatcagtgaagaggaggaggtggggagttttgcattggtatgacaaatacaaggttggaaaagagctggagaagatccgaaagaggatg |
347 |
Q |
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||||||||| ||||| ||||| |||||||| ||||||||| || ||||| ||||||| |||||||||| |||||| || |||||||||| | ||||||| |
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| T |
40656204 |
gtttgtgatcaaatcggtgaaaaggaggagatggggagttctgtattggattgacaaacacaaggttgggaaagagttgcagaagatccgcaggaggatg |
40656303 |
T |
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| Q |
348 |
agagatatctctcaga |
363 |
Q |
| |
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||||| |||||||||| |
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| T |
40656304 |
agagacatctctcaga |
40656319 |
T |
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