View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6211_high_9 (Length: 408)
Name: NF6211_high_9
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6211_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 152 - 392
Target Start/End: Original strand, 42217853 - 42218094
Alignment:
| Q |
152 |
aaatacttatgtaccagataagttcaataagttctaaataatccttgatgatattttcgtatgccagaagtgatgaaacttccctaactaccaacaaaag |
251 |
Q |
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| T |
42217853 |
aaatacttatgtaccagataagttcaataagttctaaataatccttgatgatattttcgtatgccagaagtgatgaaacatccctaactaccaacaaagg |
42217952 |
T |
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| Q |
252 |
gagttcaagaaagagagcaacctcggggattgt-gaagctgaaactggaagaatctactagggacattatatttggaatttgggcatacaaactaagatt |
350 |
Q |
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| T |
42217953 |
aagttcaagaaagagagcaacctagaagattgtggaagctaaaac---aagaatctcctagggatatgatatgtgtaatttgggcatacaaactaagatt |
42218049 |
T |
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| Q |
351 |
cctaaattgcatccctatct---tccctcacacacacggcctttg |
392 |
Q |
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| T |
42218050 |
cctaaattgcatccctatctttctccctcacacacacagcctttg |
42218094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 42185673 - 42185823
Alignment:
| Q |
5 |
gagtagcataggacaagagtgaattgttcaaattccactatgcgatagcgtagtagcaccccaaagtcactatttaacaacattgattctaattaatgag |
104 |
Q |
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| T |
42185673 |
gagtatcattggacaagagtgaattgttcaaattccactatgcgatagcgtagtagcaccccaaagtcactatttaacaacattgattctaattaatgag |
42185772 |
T |
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| Q |
105 |
attaatttcgtacttgtt-------gtatttggaaggcttattaaaataat |
148 |
Q |
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| T |
42185773 |
attaatttcgtacttgttcataaaagtatttggaaggcttattaaaataat |
42185823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 42185852 - 42185918
Alignment:
| Q |
146 |
aatataaaatacttatgtaccagataagttcaataagttctaaataatccttgatgatattttcgta |
212 |
Q |
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| T |
42185852 |
aatataaaatacttatgtaccagataagttcaataagttctaaataatccttgatgatattttcgta |
42185918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 42217685 - 42217774
Alignment:
| Q |
22 |
agtgaattgttcaaattccactatgcgatagcgtagtagcaccccaaagtcactatttaacaacattgattctaattaatgagattaatt |
111 |
Q |
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| T |
42217685 |
agtgatttgttcaaattccactatgcaatagtgtagtagcaccgtatagctgctatttaacaacatcgattctaattcatgagcttaatt |
42217774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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