View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6211_low_1 (Length: 956)

Name: NF6211_low_1
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6211_low_1
NF6211_low_1
[»] chr5 (29 HSPs)
chr5 (11-180)||(29864019-29864188)
chr5 (11-180)||(4063294-4063463)
chr5 (268-430)||(29864276-29864438)
chr5 (268-430)||(4063058-4063220)
chr5 (768-889)||(19223884-19224005)
chr5 (452-562)||(20372857-20372978)
chr5 (452-562)||(20398579-20398700)
chr5 (452-562)||(29186222-29186343)
chr5 (452-562)||(1728103-1728224)
chr5 (452-562)||(24956790-24956911)
chr5 (452-562)||(24965253-24965374)
chr5 (452-562)||(31421789-31421910)
chr5 (452-562)||(28843940-28844061)
chr5 (452-562)||(28852550-28852671)
chr5 (452-562)||(43597990-43598111)
chr5 (452-562)||(43603482-43603603)
chr5 (452-562)||(43608974-43609095)
chr5 (452-562)||(23350020-23350141)
chr5 (452-562)||(31410890-31411011)
chr5 (452-552)||(19223555-19223666)
chr5 (519-562)||(23037923-23037966)
chr5 (520-562)||(17638318-17638360)
chr5 (520-562)||(23028011-23028053)
chr5 (67-175)||(9012353-9012461)
chr5 (307-430)||(38015837-38015960)
chr5 (67-180)||(2260542-2260655)
chr5 (70-180)||(8128099-8128209)
chr5 (455-497)||(41099796-41099838)
chr5 (83-180)||(4062453-4062550)
[»] chr8 (46 HSPs)
chr8 (11-180)||(34802562-34802731)
chr8 (12-180)||(16311389-16311557)
chr8 (14-180)||(37249319-37249485)
chr8 (268-430)||(16311645-16311807)
chr8 (268-430)||(16248432-16248594)
chr8 (268-430)||(34802312-34802474)
chr8 (27-180)||(16248191-16248344)
chr8 (268-422)||(16306187-16306341)
chr8 (268-430)||(37249575-37249737)
chr8 (452-561)||(26873549-26873669)
chr8 (452-562)||(17973565-17973686)
chr8 (452-562)||(39837506-39837627)
chr8 (452-562)||(39845549-39845670)
chr8 (452-562)||(4839726-4839847)
chr8 (452-562)||(26875998-26876119)
chr8 (452-562)||(30938282-30938403)
chr8 (452-562)||(25579756-25579877)
chr8 (452-562)||(1407017-1407138)
chr8 (452-562)||(17683740-17683861)
chr8 (11-148)||(12158184-12158320)
chr8 (452-562)||(17664584-17664705)
chr8 (772-875)||(16759653-16759754)
chr8 (772-875)||(16773537-16773638)
chr8 (762-817)||(17664326-17664381)
chr8 (762-817)||(17683482-17683537)
chr8 (84-174)||(10279925-10280015)
chr8 (14-75)||(19261873-19261934)
chr8 (86-175)||(15342752-15342841)
chr8 (86-175)||(15431817-15431906)
chr8 (86-175)||(15523121-15523210)
chr8 (18-123)||(18431176-18431281)
chr8 (822-878)||(17527349-17527405)
chr8 (452-498)||(4582204-4582250)
chr8 (372-430)||(13756595-13756653)
chr8 (67-180)||(14714823-14714936)
chr8 (762-900)||(14891506-14891644)
chr8 (112-154)||(15630851-15630893)
chr8 (70-180)||(16249705-16249815)
chr8 (70-180)||(16312915-16313025)
chr8 (70-180)||(34801126-34801236)
chr8 (85-171)||(35226345-35226431)
chr8 (67-180)||(40260928-40261042)
chr8 (112-154)||(43217288-43217330)
chr8 (385-430)||(10279114-10279159)
chr8 (84-172)||(12157538-12157627)
chr8 (67-144)||(16221266-16221343)
[»] chr1 (31 HSPs)
chr1 (11-180)||(34161281-34161450)
chr1 (10-180)||(17001800-17001970)
chr1 (268-430)||(34161030-34161192)
chr1 (268-430)||(17002059-17002221)
chr1 (691-832)||(28993210-28993347)
chr1 (691-832)||(23950386-23950523)
chr1 (452-562)||(3432834-3432955)
chr1 (450-562)||(31539952-31540075)
chr1 (452-562)||(31548523-31548644)
chr1 (757-900)||(34584708-34584852)
chr1 (452-562)||(35104008-35104129)
chr1 (452-562)||(32137698-32137819)
chr1 (450-562)||(41746636-41746760)
chr1 (514-559)||(28457629-28457674)
chr1 (857-901)||(41746292-41746336)
chr1 (450-497)||(21498918-21498965)
chr1 (452-498)||(29221507-29221553)
chr1 (134-177)||(17381316-17381359)
chr1 (520-562)||(13462775-13462817)
chr1 (372-430)||(43387069-43387127)
chr1 (452-498)||(44320211-44320257)
chr1 (513-562)||(8241442-8241491)
chr1 (83-180)||(31089989-31090086)
chr1 (831-895)||(28457941-28458005)
chr1 (829-889)||(32137361-32137421)
chr1 (67-180)||(3837667-3837781)
chr1 (112-154)||(16852290-16852332)
chr1 (452-486)||(20314058-20314092)
chr1 (520-562)||(22460026-22460068)
chr1 (695-732)||(13806019-13806056)
chr1 (67-180)||(22541052-22541163)
[»] chr2 (44 HSPs)
chr2 (691-896)||(20371916-20372120)
chr2 (762-889)||(20621849-20621976)
chr2 (768-889)||(25483929-25484050)
chr2 (750-897)||(26719327-26719474)
chr2 (750-897)||(26733415-26733562)
chr2 (452-562)||(14582925-14583046)
chr2 (452-562)||(15944501-15944622)
chr2 (452-562)||(15953016-15953137)
chr2 (452-562)||(20372258-20372378)
chr2 (452-562)||(20621518-20621639)
chr2 (452-562)||(35138593-35138714)
chr2 (452-562)||(35146929-35147050)
chr2 (452-562)||(41233788-41233909)
chr2 (13-170)||(31964683-31964840)
chr2 (757-900)||(34529543-34529687)
chr2 (757-900)||(34543516-34543660)
chr2 (451-562)||(42574497-42574619)
chr2 (452-562)||(38168301-38168422)
chr2 (452-562)||(42565873-42565994)
chr2 (452-552)||(25483601-25483712)
chr2 (452-552)||(25491207-25491318)
chr2 (451-498)||(17687417-17687464)
chr2 (494-562)||(35037909-35037977)
chr2 (452-550)||(44372705-44372814)
chr2 (452-550)||(44388616-44388725)
chr2 (494-562)||(35303790-35303858)
chr2 (89-174)||(14909059-14909143)
chr2 (452-497)||(42249475-42249520)
chr2 (85-180)||(6911589-6911684)
chr2 (451-498)||(24285695-24285742)
chr2 (451-498)||(34070623-34070670)
chr2 (372-430)||(3395422-3395480)
chr2 (452-498)||(24292372-24292418)
chr2 (11-80)||(27879169-27879238)
chr2 (67-172)||(36720386-36720491)
chr2 (11-75)||(6911367-6911431)
chr2 (454-498)||(26903352-26903396)
chr2 (370-426)||(38796848-38796904)
chr2 (272-418)||(31964948-31965095)
chr2 (84-175)||(45056001-45056092)
chr2 (112-154)||(14869151-14869193)
chr2 (90-180)||(29652041-29652131)
chr2 (67-175)||(5788532-5788641)
chr2 (88-173)||(38797089-38797174)
[»] chr4 (31 HSPs)
chr4 (10-180)||(26288139-26288309)
chr4 (11-180)||(55051179-55051348)
chr4 (268-430)||(55050942-55051104)
chr4 (268-417)||(26288398-26288547)
chr4 (13-173)||(6555624-6555784)
chr4 (452-562)||(8094226-8094347)
chr4 (452-562)||(8103032-8103153)
chr4 (452-562)||(12996476-12996597)
chr4 (451-562)||(4523624-4523746)
chr4 (452-562)||(27343635-27343756)
chr4 (13-173)||(315441-315601)
chr4 (14-146)||(3773973-3774105)
chr4 (452-562)||(21532249-21532369)
chr4 (452-562)||(52295604-52295725)
chr4 (452-562)||(12428422-12428543)
chr4 (452-498)||(10638328-10638374)
chr4 (67-180)||(42729137-42729250)
chr4 (782-895)||(47522205-47522318)
chr4 (772-875)||(1877348-1877449)
chr4 (772-875)||(1891463-1891564)
chr4 (494-562)||(33188818-33188886)
chr4 (272-418)||(315159-315305)
chr4 (67-180)||(17449682-17449795)
chr4 (901-935)||(21531833-21531867)
chr4 (67-180)||(50158420-50158533)
chr4 (83-175)||(24182177-24182269)
chr4 (513-562)||(3424403-3424450)
chr4 (93-151)||(22679005-22679063)
chr4 (70-180)||(26289664-26289774)
chr4 (67-180)||(52542532-52542646)
chr4 (509-546)||(12402920-12402957)
[»] chr6 (31 HSPs)
chr6 (11-180)||(23408205-23408371)
chr6 (691-897)||(20532275-20532480)
chr6 (268-430)||(23408459-23408621)
chr6 (272-430)||(9450579-9450738)
chr6 (797-897)||(19828155-19828255)
chr6 (452-562)||(5994699-5994820)
chr6 (750-897)||(27535726-27535873)
chr6 (750-897)||(27549936-27550083)
chr6 (452-562)||(30824473-30824594)
chr6 (452-562)||(35091620-35091741)
chr6 (450-562)||(13825701-13825824)
chr6 (19-179)||(9450332-9450486)
chr6 (452-562)||(5004061-5004182)
chr6 (452-562)||(15391555-15391676)
chr6 (452-562)||(11279837-11279958)
chr6 (452-562)||(25550295-25550416)
chr6 (452-562)||(33298085-33298205)
chr6 (454-562)||(25991852-25991971)
chr6 (452-562)||(25506485-25506606)
chr6 (452-498)||(5489138-5489184)
chr6 (452-498)||(23925335-23925381)
chr6 (452-498)||(13490193-13490239)
chr6 (782-889)||(25550639-25550746)
chr6 (831-889)||(25992255-25992313)
chr6 (509-562)||(26526646-26526699)
chr6 (829-889)||(5995058-5995118)
chr6 (452-492)||(11053702-11053742)
chr6 (83-174)||(3531714-3531805)
chr6 (495-562)||(14894926-14894993)
chr6 (372-430)||(1599741-1599799)
chr6 (348-414)||(2970425-2970491)
[»] chr3 (49 HSPs)
chr3 (268-430)||(19816249-19816411)
chr3 (748-895)||(3710145-3710292)
chr3 (14-173)||(52754687-52754846)
chr3 (750-897)||(39705342-39705489)
chr3 (452-562)||(50824352-50824473)
chr3 (452-562)||(50851387-50851508)
chr3 (452-562)||(8154588-8154709)
chr3 (452-562)||(14538548-14538670)
chr3 (452-562)||(27341279-27341400)
chr3 (452-562)||(41006556-41006677)
chr3 (452-562)||(41015336-41015457)
chr3 (452-562)||(17919199-17919320)
chr3 (494-562)||(43470497-43470565)
chr3 (451-498)||(17628264-17628311)
chr3 (452-562)||(28470162-28470282)
chr3 (451-498)||(9555127-9555174)
chr3 (452-562)||(17933655-17933776)
chr3 (452-498)||(9525453-9525499)
chr3 (451-498)||(2211238-2211285)
chr3 (857-900)||(14538207-14538250)
chr3 (12-146)||(34849430-34849562)
chr3 (452-498)||(30495-30541)
chr3 (452-498)||(8197715-8197761)
chr3 (67-144)||(52752620-52752697)
chr3 (494-562)||(16816149-16816216)
chr3 (762-814)||(18955378-18955430)
chr3 (782-889)||(27340942-27341048)
chr3 (83-169)||(10976143-10976229)
chr3 (452-498)||(18039011-18039057)
chr3 (901-935)||(28469738-28469772)
chr3 (85-176)||(32264881-32264974)
chr3 (748-814)||(50824660-50824726)
chr3 (748-814)||(50851134-50851200)
chr3 (14-75)||(51857-51918)
chr3 (67-180)||(11655092-11655204)
chr3 (857-897)||(18955307-18955347)
chr3 (451-498)||(18349555-18349602)
chr3 (17-80)||(39186151-39186214)
chr3 (112-154)||(6436242-6436284)
chr3 (112-154)||(9262170-9262212)
chr3 (70-180)||(19817070-19817180)
chr3 (452-498)||(21186747-21186793)
chr3 (520-562)||(31276593-31276635)
chr3 (334-412)||(32971094-32971172)
chr3 (372-430)||(50331928-50331986)
chr3 (509-562)||(2211307-2211360)
chr3 (385-430)||(32970441-32970486)
chr3 (381-430)||(40417872-40417921)
chr3 (301-418)||(52754440-52754557)
[»] chr7 (23 HSPs)
chr7 (11-113)||(29913595-29913697)
chr7 (750-897)||(1888510-1888657)
chr7 (750-897)||(1902611-1902758)
chr7 (750-897)||(24187709-24187856)
chr7 (451-562)||(18304336-18304458)
chr7 (452-562)||(4952341-4952462)
chr7 (452-562)||(12978455-12978576)
chr7 (452-562)||(13831500-13831621)
chr7 (452-562)||(13839531-13839652)
chr7 (14-179)||(18347988-18348153)
chr7 (452-562)||(10439937-10440058)
chr7 (15-173)||(6676239-6676396)
chr7 (452-498)||(4941596-4941642)
chr7 (495-562)||(21662966-21663033)
chr7 (89-180)||(4110048-4110139)
chr7 (512-562)||(1955696-1955746)
chr7 (452-498)||(30244775-30244821)
chr7 (842-889)||(10440355-10440402)
chr7 (17-80)||(20181766-20181829)
chr7 (452-498)||(21663042-21663088)
chr7 (70-180)||(29912885-29912995)
chr7 (452-498)||(30245568-30245614)
chr7 (460-498)||(30255420-30255458)
[»] scaffold0632 (3 HSPs)
scaffold0632 (691-832)||(4657-4798)
scaffold0632 (452-562)||(4390-4511)
scaffold0632 (841-889)||(4794-4842)
[»] scaffold0039 (2 HSPs)
scaffold0039 (762-889)||(40455-40582)
scaffold0039 (452-552)||(40787-40898)
[»] scaffold0484 (1 HSPs)
scaffold0484 (768-896)||(11112-11240)
[»] scaffold0211 (2 HSPs)
scaffold0211 (13-173)||(16004-16164)
scaffold0211 (272-418)||(16252-16399)
[»] scaffold0156 (2 HSPs)
scaffold0156 (451-562)||(35300-35422)
scaffold0156 (829-889)||(34975-35035)
[»] scaffold0497 (2 HSPs)
scaffold0497 (452-562)||(10993-11114)
scaffold0497 (829-889)||(11401-11461)
[»] scaffold0051 (2 HSPs)
scaffold0051 (35-180)||(17633-17778)
scaffold0051 (272-397)||(17414-17538)
[»] scaffold0111 (1 HSPs)
scaffold0111 (452-562)||(33035-33156)
[»] scaffold0083 (1 HSPs)
scaffold0083 (452-562)||(15813-15934)
[»] scaffold0209 (1 HSPs)
scaffold0209 (452-562)||(28-149)
[»] scaffold0002 (1 HSPs)
scaffold0002 (452-558)||(121228-121345)
[»] scaffold0284 (3 HSPs)
scaffold0284 (13-147)||(8573-8707)
scaffold0284 (301-418)||(70-187)
scaffold0284 (301-418)||(8885-9002)
[»] scaffold0431 (1 HSPs)
scaffold0431 (452-562)||(139-260)
[»] scaffold0173 (1 HSPs)
scaffold0173 (452-562)||(873-994)
[»] scaffold0114 (1 HSPs)
scaffold0114 (11-146)||(621-756)
[»] scaffold0048 (1 HSPs)
scaffold0048 (452-499)||(7647-7694)
[»] scaffold0222 (2 HSPs)
scaffold0222 (496-562)||(20426-20492)
scaffold0222 (446-481)||(20518-20553)
[»] scaffold0016 (3 HSPs)
scaffold0016 (452-498)||(23464-23510)
scaffold0016 (782-889)||(23816-23922)
scaffold0016 (509-562)||(23533-23586)
[»] scaffold0027 (3 HSPs)
scaffold0027 (762-875)||(65347-65460)
scaffold0027 (508-562)||(65648-65702)
scaffold0027 (452-485)||(65710-65743)
[»] scaffold0170 (1 HSPs)
scaffold0170 (451-562)||(7134-7256)
[»] scaffold0315 (1 HSPs)
scaffold0315 (511-562)||(10600-10651)
[»] scaffold1487 (2 HSPs)
scaffold1487 (459-498)||(762-801)
scaffold1487 (782-889)||(550-656)
[»] scaffold0991 (1 HSPs)
scaffold0991 (451-498)||(392-439)
[»] scaffold0015 (1 HSPs)
scaffold0015 (452-491)||(192528-192567)
[»] scaffold0863 (1 HSPs)
scaffold0863 (452-498)||(391-437)
[»] scaffold0044 (2 HSPs)
scaffold0044 (452-498)||(81805-81851)
scaffold0044 (452-498)||(65557-65603)
[»] scaffold0473 (1 HSPs)
scaffold0473 (840-889)||(8811-8860)
[»] scaffold0061 (1 HSPs)
scaffold0061 (381-430)||(44909-44958)
[»] scaffold0021 (1 HSPs)
scaffold0021 (83-180)||(128734-128831)
[»] scaffold0017 (1 HSPs)
scaffold0017 (381-430)||(153829-153878)
[»] scaffold0169 (1 HSPs)
scaffold0169 (83-171)||(4798-4886)
[»] scaffold0290 (1 HSPs)
scaffold0290 (495-562)||(15765-15832)
[»] scaffold0159 (1 HSPs)
scaffold0159 (67-175)||(32905-33014)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 2e-88; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 29864019 - 29864188
Alignment:
Q  11 atcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29864019 atcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataaca 29864118  T
Q  111 aatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29864119 aatctacaattttctactgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 29864188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 4063463 - 4063294
Alignment:
Q  11 atcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataaca 110  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4063463 atcatcatattaggttaagagtaatcacacaagtgagagcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcatagca 4063364  T
Q  111 aatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4063363 aatctacaattttccattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 4063294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 268 - 430
Target Start/End: Original strand, 29864276 - 29864438
Alignment:
Q  268 cacccatcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 367  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  29864276 cacccatcataatgtttagacttccgggggagtctaaactgggttgtataatcacagtagagtaaaatcaaccataaaagtgagattcacaccatagttt 29864375  T
Q  368 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29864376 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcatcatctac 29864438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 268 - 430
Target Start/End: Complemental strand, 4063220 - 4063058
Alignment:
Q  268 cacccatcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 367  Q
    |||||||||||||||||||||| || ||| |||  |||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  4063220 cacccatcataatgtttagactcccgggggagttgaaacagggttgtataatcacaatagggtaaagtcaaccataaaagtgagattcacaccatatttt 4063121  T
Q  368 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4063120 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcatcatctac 4063058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 768 - 889
Target Start/End: Original strand, 19223884 - 19224005
Alignment:
Q  768 catgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatg 867  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||  | |||||||  |||||||| |||||||||||| ||| |||||||||||    
T  19223884 catgtttaggcaagttcatagggtcaagtttttgttgccaaatccagcaatgcggtagtaacctctgcaagttatttccttattttattcaaccctaatg 19223983  T
Q  868 ctataaaagcaaacctgcaaaa 889  Q
     ||||||| |||||||||||||    
T  19223984 gtataaaatcaaacctgcaaaa 19224005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 20372978 - 20372857
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||           ||||| ||  |||||||||||||||||||||||||||||||     
T  20372978 tgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacag 20372879  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  20372878 agaggttactttgaagtacctc 20372857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 20398700 - 20398579
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||           ||||| ||  |||||||||||||||||||||||||||||||     
T  20398700 tgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacag 20398601  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  20398600 agaggttactttgaagtacctc 20398579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 29186343 - 29186222
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||           ||||| ||  ||||||||||||||||||||||||||||||||    
T  29186343 tgtcataccccaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 29186244  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||| ||||    
T  29186243 agaggttactttgaagtgcctc 29186222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 1728224 - 1728103
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||           ||||| ||  |||||||| ||||||||||||||||| |||||    
T  1728224 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttgacaa 1728125  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  1728124 agaggttactttgaagtacctc 1728103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 24956911 - 24956790
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccca-----------tttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||           ||||||||| ||  |||||||||||||||||||||||||| | |||    
T  24956911 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 24956812  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  24956811 ggaggttactttgaagtacctc 24956790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 24965374 - 24965253
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccca-----------tttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||           ||||||||| ||  |||||||||||||||||||||||||| | |||    
T  24965374 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 24965275  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  24965274 ggaggttactttgaagtacctc 24965253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 31421789 - 31421910
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||           | ||| || |||||||||||||||||||| ||||||||||||    
T  31421789 tgtcatacccaaaattttgaccacttttctctattcttacccattttattcgtatttttgaagtcggaaattttcgtcgtttcagacaaaatttcgacaa 31421888  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||| ||||||||||||||||||    
T  31421889 agatgttactttgaagtacctc 31421910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 28843940 - 28844061
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||           |||||  || |||||||| ||||||||||||||||| | |||    
T  28843940 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 28844039  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  28844040 agaggttactttgaagtacctc 28844061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 28852550 - 28852671
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||           |||||  || |||||||| ||||||||||||||||| | |||    
T  28852550 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 28852649  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  28852650 agaggttactttgaagtacctc 28852671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 43598111 - 43597990
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||           ||||| ||  |||||||| ||||||||||||||||| | |||    
T  43598111 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43598012  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  43598011 agaggttactttgaagtacctc 43597990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 43603603 - 43603482
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||           ||||| ||  |||||||| ||||||||||||||||| | |||    
T  43603603 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43603504  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  43603503 agaggttactttgaagtacctc 43603482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 43609095 - 43608974
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||           ||||| ||  |||||||| ||||||||||||||||| | |||    
T  43609095 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43608996  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  43608995 agaggttactttgaagtacctc 43608974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 23350141 - 23350020
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||           ||||| ||  |||| ||||| ||||||||||||||||| |||    
T  23350141 tgtcataccccaaattttgaccatttttctctatttttacccattttattcgtatttttaaagtcgggaattctcgtcatttcagacgaaatttcggcaa 23350042  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  23350041 agaggttactttgaagtacctc 23350020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 31410890 - 31411011
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||           |||||     |||||||||||||| | |||||||||||||||    
T  31410890 tgtcataccccaaattttgaccacatttctctattctaacccattttattcgtatttttaaagttaggaattttcgtcgtttaaaacgaaatttcgacaa 31410989  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  31410990 agaggttactttgaagtacctc 31411011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 452 - 552
Target Start/End: Original strand, 19223555 - 19223666
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||| ||           |||||||||| ||| |||| ||||||||||||| ||||| ||||||     
T  19223555 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattgtcgtcgtttcagatgaaatctcgacag 19223654  T
Q  541 agaggttacttt 552  Q
    ||||||||||||    
T  19223655 agaggttacttt 19223666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 519 - 562
Target Start/End: Original strand, 23037923 - 23037966
Alignment:
Q  519 gtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    |||||||||||||||||| || ||||||||||||||||||||||    
T  23037923 gtttcagacgaaatttcggcagagaggttactttgaagtacctc 23037966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 520 - 562
Target Start/End: Original strand, 17638318 - 17638360
Alignment:
Q  520 tttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    ||||| |||||||||||||| ||||||||||||||||||||||    
T  17638318 tttcaaacgaaatttcgacagagaggttactttgaagtacctc 17638360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 520 - 562
Target Start/End: Complemental strand, 23028053 - 23028011
Alignment:
Q  520 tttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  23028053 tttcagacgaaatttcggcagagaggttactttgaagtacctc 23028011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 9012353 - 9012461
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaa 166  Q
    ||||||||| ||||  |||||||||||||||||| |  | |||| | ||||| |||   ||| ||| |||||||||||||||||||||  || ||||| |    
T  9012353 ttaaaatgtctaataaacatgtattttgtcaattgaatagaacacacctacattttgtcattatcatatcccaccaaagatcaaaagtggaggaatttga 9012452  T
Q  167 aataataga 175  Q
    |||||||||    
T  9012453 aataataga 9012461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 430
Target Start/End: Original strand, 38015837 - 38015960
Alignment:
Q  307 tgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttttattcaaaatctaaaggcattaggtatatgggtcatttc 406  Q
    |||||||||| || ||| |||| ||||| ||| || | |||||||||| ||| || |  || |  |||||||| ||| |||||| |||||| ||||| ||    
T  38015837 tgggttgtatcataacattaggctaaaagcaagcacacaagtgagattgacatcacaacttcacccaaaatcttaagtcattagatatatgagtcatctc 38015936  T
Q  407 acttatatttttctcaacatctac 430  Q
    |||||||| || ||||||||||||    
T  38015937 acttatatgttgctcaacatctac 38015960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 180
Target Start/End: Original strand, 2260542 - 2260655
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaa-aagttaagtaattta 165  Q
    ||||||||| ||||   |||||||||| |||| ||| || |||| ||||| | ||||| |||||| |||||||||||||| ||| |||  ||| |||||     
T  2260542 ttaaaatgtctaataagcatgtattttatcaactcaccagaacacatctatatttttccattgtcggatcccaccaaagaccaagaagaaaag-aatttg 2260640  T
Q  166 aaataatagatgttg 180  Q
    |||||||||||||||    
T  2260641 aaataatagatgttg 2260655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 8128099 - 8128209
Alignment:
Q  70 aaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaat 169  Q
    |||||| ||||  ||||||||||||| || ||||||||||| |||| |||||||| |||| ||  | || ||||||  |||||||| |  |||||||| |    
T  8128099 aaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattgccacttgccgccaaagtccaaaagttgatgaatttaaatt 8128198  T
Q  170 aatagatgttg 180  Q
    |||||| ||||    
T  8128199 aatagaggttg 8128209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 455 - 497
Target Start/End: Complemental strand, 41099838 - 41099796
Alignment:
Q  455 cataccccaaattttgaccacttttctctattcttacccattt 497  Q
    ||||||||||||||||||||||||| |||||| |||| |||||    
T  41099838 cataccccaaattttgaccacttttatctatttttacacattt 41099796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 4062550 - 4062453
Alignment:
Q  83 acatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    ||||||||||| | || ||||||||||| |||| ||||||||||||| ||  | || ||||||  |||||||| |  |||||||| ||||||| ||||    
T  4062550 acatgtattttctgaactcagcataacacatctgcaattttctattgccacttgccgccaaagtccaaaagttgatgaatttaaattaatagaggttg 4062453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 6e-86; HSPs: 46)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 34802731 - 34802562
Alignment:
Q  11 atcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34802731 atcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttatcaattcagcataaca 34802632  T
Q  111 aatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34802631 aatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagacgttg 34802562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 16311389 - 16311557
Alignment:
Q  12 tcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16311389 tcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaa 16311488  T
Q  112 atctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16311489 atctacaattttccattgtcagatcccaccaaagataaaaagttaagtaatttaaaataatagatgttg 16311557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 155; E-Value: 9e-82
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 37249319 - 37249485
Alignment:
Q  14 atcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37249319 atcatattaggttaagagcaatcacacaagtgagatcgacacttcatattaacttaaaatgtgtaatgtacatgtattttgtcaattcagcataacaaat 37249418  T
Q  114 ctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37249419 ctataattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 37249485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 268 - 430
Target Start/End: Original strand, 16311645 - 16311807
Alignment:
Q  268 cacccatcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 367  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16311645 cacccatcataatgtttagacttccgggggagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 16311744  T
Q  368 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16311745 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcatcatctac 16311807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 268 - 430
Target Start/End: Original strand, 16248432 - 16248594
Alignment:
Q  268 cacccatcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 367  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16248432 cacccatcataatgtttagacttccgggggagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaactgagattcacaccatatttt 16248531  T
Q  368 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16248532 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcatcatctac 16248594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 268 - 430
Target Start/End: Complemental strand, 34802474 - 34802312
Alignment:
Q  268 cacccatcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 367  Q
    ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34802474 cacccatcataatgtttagactttcgggggagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 34802375  T
Q  368 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34802374 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcatcatctac 34802312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 27 - 180
Target Start/End: Original strand, 16248191 - 16248344
Alignment:
Q  27 aagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttcta 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  16248191 aagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatgtacatgtattttttcaattcagcataacaaatctacaattttcta 16248290  T
Q  127 ttgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16248291 ttgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 16248344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 268 - 422
Target Start/End: Original strand, 16306187 - 16306341
Alignment:
Q  268 cacccatcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 367  Q
    ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16306187 cacccatcataatgtttagactttcgggggagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 16306286  T
Q  368 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctca 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16306287 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctca 16306341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 268 - 430
Target Start/End: Original strand, 37249575 - 37249737
Alignment:
Q  268 cacccatcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 367  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37249575 cacccatcataatgtttagacttccgggggagtctaaactgggttgtttaatcacagtagtgtaaaatcaaccataaaagtgagattcacaccatatttt 37249674  T
Q  368 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37249675 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcatcatctac 37249737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 452 - 561
Target Start/End: Complemental strand, 26873669 - 26873549
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||| | || |||||||||||||||||||||||||||||||||    
T  26873669 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttgtaatgtcggaaattttcgtcgtttcagacgaaatttcgacaa 26873570  T
Q  541 agaggttactttgaagtacct 561  Q
    |||||||||||| ||||||||    
T  26873569 agaggttactttaaagtacct 26873549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 17973565 - 17973686
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||||| ||     
T  17973565 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 17973664  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  17973665 agaggttactttgaagtacctc 17973686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 39837627 - 39837506
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||| |||||    
T  39837627 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 39837528  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  39837527 agaggttactttgaagtacctc 39837506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 39845670 - 39845549
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||| |||||    
T  39845670 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 39845571  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  39845570 agaggttactttgaagtacctc 39845549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 4839847 - 4839726
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||           ||||| ||  ||||||||||||||||||||||||||||||||    
T  4839847 tgtcataccccaaattttgaccgcttttctctattcttacctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 4839748  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||| ||||||||||||||||||    
T  4839747 agaagttactttgaagtacctc 4839726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 26876119 - 26875998
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccca-----------tttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||           ||||||| | || ||||||| |||||||||||||||||||||||||    
T  26876119 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaatgtcggaaatttttgtcgtttcagacgaaatttcgacaa 26876020  T
Q  541 agaggttactttgaagtacctc 562  Q
    |||||||||||| || ||||||    
T  26876019 agaggttactttaaaatacctc 26875998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 30938282 - 30938403
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||| ||  |||||||||||||||||||||||||| | |||    
T  30938282 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30938381  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  30938382 ggaggttactttgaagtacctc 30938403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 25579877 - 25579756
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||| | |||    
T  25579877 tgtcataccctaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 25579778  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  25579777 agaggttactttgaagtacctc 25579756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 1407138 - 1407017
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccca-----------tttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||           |||||||||  |  |||||||| ||||||||||||||||| | |||    
T  1407138 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgtgaattttcgccgtttcagacgaaattttggcaa 1407039  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  1407038 agaggttactttgaagtacctc 1407017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 17683861 - 17683740
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||           || || ||  |||||||||||||||||||||||||| |||||    
T  17683861 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcgtcgtttcagacgaaattttgacaa 17683762  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||| ||||||||||||||||||    
T  17683761 agaagttactttgaagtacctc 17683740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 12158320 - 12158184
Alignment:
Q  11 atcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataaca 110  Q
    |||||||| || ||||||  |||||||| |||||||||| ||| | |||| ||||||||||||||  |||   ||| |||| | |||||||||||||| |    
T  12158320 atcatcatttttggttaaaggcaatcacgcaagtgagattgacgccacatcttaacttaaaatgtcaaataagcatatattgt-tcaattcagcataaaa 12158222  T
Q  111 aatctacaattttctattgtcagatcccaccaaagatc 148  Q
     ||||||||||||||||| ||||||||| |||||||||    
T  12158221 catctacaattttctattttcagatcccgccaaagatc 12158184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 17664705 - 17664584
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||           || || ||  ||||||| |||||||||||||||||| |||||    
T  17664705 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcatcgtttcagacgaaattttgacaa 17664606  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||| ||||||||||||||||||    
T  17664605 agaagttactttgaagtacctc 17664584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 772 - 875
Target Start/End: Original strand, 16759653 - 16759754
Alignment:
Q  772 tttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatgctat 871  Q
    ||||||||  ||||||||||||||    |||||||||||||||| | |||||||||||  ||||||| |||||||||||| | | ||||||||||| |||    
T  16759653 tttaggcagattcatagggtcaaatgaatgttgccaaatccagccactcagtagtaat--ctgcaagttatttccttattatcttcaaccctaatggtat 16759750  T
Q  872 aaaa 875  Q
    ||||    
T  16759751 aaaa 16759754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 772 - 875
Target Start/End: Original strand, 16773537 - 16773638
Alignment:
Q  772 tttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatgctat 871  Q
    ||||||||  ||||||||||||||    |||||||||||||||| | |||||||||||  ||||||| |||||||||||| | | ||||||||||| |||    
T  16773537 tttaggcagattcatagggtcaaatgaatgttgccaaatccagccactcagtagtaat--ctgcaagttatttccttattatcttcaaccctaatggtat 16773634  T
Q  872 aaaa 875  Q
    ||||    
T  16773635 aaaa 16773638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 762 - 817
Target Start/End: Complemental strand, 17664381 - 17664326
Alignment:
Q  762 acgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaa 817  Q
    ||||| ||||||||| |||||||||||||||||  |||||||||||||||||||||    
T  17664381 acgccgcatgtttagacaagttcatagggtcaagtttttgttgccaaatccagcaa 17664326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 762 - 817
Target Start/End: Complemental strand, 17683537 - 17683482
Alignment:
Q  762 acgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaa 817  Q
    ||||| ||||||||| |||||||||||||||||  |||||||||||||||||||||    
T  17683537 acgccgcatgtttagacaagttcatagggtcaagtttttgttgccaaatccagcaa 17683482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 10280015 - 10279925
Alignment:
Q  84 catgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatag 174  Q
    |||||||||| |||| | |||  |||| ||| ||| ||||||||||||| || |||||||||||||||||| ||  |||||||||||||||    
T  10280015 catgtattttatcaacttagcgaaacacatcaacatttttctattgtcaaattccaccaaagatcaaaagtgaaagaatttaaaataatag 10279925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 19261873 - 19261934
Alignment:
Q  14 atcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgt 75  Q
    |||||||||||||||  ||||||||||| ||||||| ||||| |||| ||||||||||||||    
T  19261873 atcatattaggttaaaggcaatcacacatgtgagattgacaccacatcttaacttaaaatgt 19261934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 15342752 - 15342841
Alignment:
Q  86 tgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataataga 175  Q
    ||||||||||||| ||||||||||| || ||||||||| |||| |||  | |||||||| | |||||| |||  ||||| ||||||||||    
T  15342752 tgtattttgtcaactcagcataacacatatacaattttttattatcacttgccaccaaaaaccaaaagataataaatttgaaataataga 15342841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 15431817 - 15431906
Alignment:
Q  86 tgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataataga 175  Q
    ||||||||||||| ||||||||||| || ||||||||| |||| |||  | |||||||| | |||||| |||  ||||| ||||||||||    
T  15431817 tgtattttgtcaactcagcataacacatatacaattttttattatcacttgccaccaaaaaccaaaagataataaatttgaaataataga 15431906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 15523121 - 15523210
Alignment:
Q  86 tgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataataga 175  Q
    ||||||||||||| ||||||||||| || ||||||||| |||| |||  | |||||||| | |||||| |||  ||||| ||||||||||    
T  15523121 tgtattttgtcaactcagcataacacatatacaattttttattatcacttgccaccaaaaaccaaaagataataaatttgaaataataga 15523210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 18431176 - 18431281
Alignment:
Q  18 tattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctac 117  Q
    ||||||| ||||||||| ||||||||||| ||  |||| ||||||| ||| ||||||| ||||   |||||||||||| |  ||| ||||| | ||||||    
T  18431176 tattaggctaagagcaaccacacaagtgatattcacaccacatattcactgaaaatgtctaataagcatgtattttgttacctcatcataatacatctac 18431275  T
Q  118 aatttt 123  Q
    ||||||    
T  18431276 aatttt 18431281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 822 - 878
Target Start/End: Original strand, 17527349 - 17527405
Alignment:
Q  822 gtagtaatttctgcaagatatttccttattctatccaaccctaatgctataaaagca 878  Q
    ||||||| ||||||||| |||||||||||| | | ||||||||||| ||||||||||    
T  17527349 gtagtaacttctgcaagttatttccttattatcttcaaccctaatgatataaaagca 17527405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 4582204 - 4582250
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||  |||||||||||||||||||||||| |||| ||||||    
T  4582204 tgtcataccttaaattttgaccacttttctctatttttacacatttt 4582250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 13756653 - 13756595
Alignment:
Q  372 caaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    |||||||| ||| |||||| || ||| ||||||||||||| || |||||||||||||||    
T  13756653 caaaatcttaagacattagatacatgagtcatttcacttaaatgtttctcaacatctac 13756595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 14714936 - 14714823
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaa-aagttaagtaattta 165  Q
    ||||||||| ||||   |||||||||| |||| ||| || |||| ||||| | ||||| |||||||||||||| |||||| ||| |||  ||| |||||     
T  14714936 ttaaaatgtctaataagcatgtattttatcaactcaccaaaacacatctatatttttccattgtcagatcccatcaaagaccaagaaggaaag-aatttg 14714838  T
Q  166 aaataatagatgttg 180  Q
    |||||||||||||||    
T  14714837 aaataatagatgttg 14714823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 762 - 900
Target Start/End: Complemental strand, 14891644 - 14891506
Alignment:
Q  762 acgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaacc 861  Q
    ||||| ||| || ||||||  ||||||||||  | ||||||| |||||||||  ||  | |||| ||  |||||||| |||||||||||| | ||||| |    
T  14891644 acgcctcattttcaggcaaaatcatagggtcttacttttgtttccaaatccactaacacggtagcaacctctgcaagttatttccttattatctccaaac 14891545  T
Q  862 ctaatgctataaaagcaaacctgcaaaatacagaaaggg 900  Q
    ||||  ||||||||  ||| |||||||| ||||||||||    
T  14891544 ctaacactataaaacaaaatctgcaaaacacagaaaggg 14891506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 15630893 - 15630851
Alignment:
Q  112 atctacaattttctattgtcagatcccaccaaagatcaaaagt 154  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||    
T  15630893 atctacatttttctattgtaagatctcaccaaagatcaaaagt 15630851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 16249705 - 16249815
Alignment:
Q  70 aaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaat 169  Q
    |||||| ||||  ||||||||||||| || ||||||||||| |||| |||||||| |||| ||  | || ||||||  |||||||| |  |||||||| |    
T  16249705 aaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattgccacttgccgccaaagtccaaaagttgatgaatttaaatt 16249804  T
Q  170 aatagatgttg 180  Q
    |||||| ||||    
T  16249805 aatagaggttg 16249815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 16312915 - 16313025
Alignment:
Q  70 aaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaat 169  Q
    |||||| ||||  ||||||||||||| || ||||||||||| |||| |||||||| |||| ||  | || ||||||  |||||||| |  |||||||| |    
T  16312915 aaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattgccacttgccgccaaagtccaaaagttgatgaatttaaatt 16313014  T
Q  170 aatagatgttg 180  Q
    |||||| ||||    
T  16313015 aatagaggttg 16313025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 34801236 - 34801126
Alignment:
Q  70 aaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaat 169  Q
    |||||| ||||  ||||||||||||| || ||||||||||| |||| |||||||| |||| ||  | || ||||||  |||||||| |  |||||||| |    
T  34801236 aaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattgccacttgccgccaaagtccaaaagttgatgaatttaaatt 34801137  T
Q  170 aatagatgttg 180  Q
    |||||| ||||    
T  34801136 aatagaggttg 34801126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 35226345 - 35226431
Alignment:
Q  85 atgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataa 171  Q
    |||||||||||||| | | |||||||  ||| |||||||  ||||||| || |||||||||||||||||| ||| ||| | ||||||    
T  35226345 atgtattttgtcaacttaacataacacttctgcaatttttaattgtcacatgccaccaaagatcaaaagtgaaggaatctgaaataa 35226431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 40261042 - 40260928
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaattt-a 165  Q
    ||||||||| ||||   |||||||||||| |||||||||||||| |||| || ||||  ||| | | ||||||||||| | ||||| | ||| ||||| |    
T  40261042 ttaaaatgtttaataatcatgtattttgtaaattcagcataacacatctgcattttttaatttttacatcccaccaaataccaaaattaaaggaatttaa 40260943  T
Q  166 aaataatagatgttg 180  Q
    |||||||||| ||||    
T  40260942 aaataatagaggttg 40260928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 43217288 - 43217330
Alignment:
Q  112 atctacaattttctattgtcagatcccaccaaagatcaaaagt 154  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||    
T  43217288 atctacatttttctattgtaagatctcaccaaagatcaaaagt 43217330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 430
Target Start/End: Complemental strand, 10279159 - 10279114
Alignment:
Q  385 cattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    |||||||||||||| |||| ||||||||| |||||||| |||||||    
T  10279159 cattaggtatatggatcatctcacttataattttctcaccatctac 10279114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 12157627 - 12157538
Alignment:
Q  84 catgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccacc-aaagatcaaaagttaagtaatttaaaataat 172  Q
    |||| |||||||||| | | ||||||| |||||||   ||||||||||| || ||||| ||| |||||| || |||||||||||||||||    
T  12157627 catgcattttgtcaactgaacataacacatctacatgattctattgtcacattccaccaaaaaatcaaaggtgaagtaatttaaaataat 12157538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 16221266 - 16221343
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaa 144  Q
    ||||||||| ||||  ||||||||||||| || ||||||||||| ||||| | ||||| ||||| | ||| |||||||    
T  16221266 ttaaaatgtctaataaacatgtattttgtaaactcagcataacacatctatatttttccattgttatatctcaccaaa 16221343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 6e-86; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 34161450 - 34161281
Alignment:
Q  11 atcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataaca 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34161450 atcatcatattaggttaagagcaatcacacaagtgagagcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataaca 34161351  T
Q  111 aatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34161350 aatctacaattttccattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 34161281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 17001800 - 17001970
Alignment:
Q  10 catcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  17001800 catcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgagtaatggacatgtattttgtcaattcagcataat 17001899  T
Q  110 aaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17001900 aaatctacaattttccattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 17001970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 268 - 430
Target Start/End: Complemental strand, 34161192 - 34161030
Alignment:
Q  268 cacccatcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 367  Q
    |||||||||||||||||||||| || ||| |||  |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34161192 cacccatcataatgtttagactcccgggggagttgaaacagggttgtataatcacagtagggtaaagtcaaccataaaagtgagattcacaccatatttt 34161093  T
Q  368 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34161092 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcatcatctac 34161030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 268 - 430
Target Start/End: Original strand, 17002059 - 17002221
Alignment:
Q  268 cacccatcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 367  Q
    |||| ||||||||||||||||| || ||| |||  |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17002059 cacctatcataatgtttagactcccgggggagttgaaacagggttgtataatcacagtagggtaaagtcaaccataaaagtgagattcacaccatatttt 17002158  T
Q  368 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17002159 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcatcatctac 17002221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 691 - 832
Target Start/End: Complemental strand, 28993347 - 28993210
Alignment:
Q  691 gtccaatgaagtcaataagtctgaaaatttcagcaagggtccatttctcnnnnnnnncttttcttctccgaacgccacatgtttaggcaagttcataggg 790  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||        ||||||||||||  |||||||||||||||||||||||||||||    
T  28993347 gtccaatgaagtcaataagtccgaaaatttcagcaagggtccatttttctttttt--cttttcttctcc--acgccacatgtttaggcaagttcataggg 28993252  T
Q  791 tcaaagttttgttgccaaatccagcaaatcagtagtaatttc 832  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  28993251 tcaaagtgttgttgccaaatccagcaaatcagtagtaatttc 28993210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 691 - 832
Target Start/End: Original strand, 23950386 - 23950523
Alignment:
Q  691 gtccaatgaagtcaataagtctgaaaatttcagcaagggtccatttctcnnnnnnnncttttcttctccgaacgccacatgtttaggcaagttcataggg 790  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||        | ||||||||||  |||||||||||||||||||||||||||||    
T  23950386 gtccaatgaagtcaataagtccgaaaatttcagcaagggtccatttttctttttt--catttcttctcc--acgccacatgtttaggcaagttcataggg 23950481  T
Q  791 tcaaagttttgttgccaaatccagcaaatcagtagtaatttc 832  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  23950482 tcaaagtgttgttgccaaatccagcaaatcagtagtaatttc 23950523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 3432955 - 3432834
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||| |||||    
T  3432955 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 3432856  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  3432855 agaggttactttgaagtacctc 3432834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 450 - 562
Target Start/End: Original strand, 31539952 - 31540075
Alignment:
Q  450 agtgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgac 538  Q
    ||||||||||||||||||||||||||||||||||||||||||||           |||||||||| ||  |||||||||||||||||||||||||| | |    
T  31539952 agtgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggc 31540051  T
Q  539 aaagaggttactttgaagtacctc 562  Q
    || |||||||||||||||||||||    
T  31540052 aaggaggttactttgaagtacctc 31540075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 31548523 - 31548644
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||| ||  |||||||||||||||||||||||||| | |||    
T  31548523 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 31548622  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  31548623 ggaggttactttgaagtacctc 31548644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 757 - 900
Target Start/End: Original strand, 34584708 - 34584852
Alignment:
Q  757 tccgaacgccacatgtttaggcaagttcatagggtcaaagtttt-gttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctat 855  Q
    |||| ||||| |||||| || ||| |||||||||||||  |||| |||||||||||| | ||  | ||||||| |||||| || ||||||||| ||| ||    
T  34584708 tccgtacgcctcatgttcagccaatttcatagggtcaatttttttgttgccaaatccgggaacgcggtagtaacttctgccagttatttccttgttcaat 34584807  T
Q  856 ccaaccctaatgctataaaagcaaacctgcaaaatacagaaaggg 900  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||    
T  34584808 ccaaccctaatactataaaagcagacctgcaaaacacagaaaggg 34584852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 35104129 - 35104008
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccca-----------tttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||           |||||||||  |  |||||||||||||||||||||||||| | |||    
T  35104129 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagttgggaattttcgtcgtttcagacgaaattttggcaa 35104030  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  35104029 ggaggttactttgaagtacctc 35104008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 32137819 - 32137698
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||           ||||| ||  ||||||||||||||||||||||||||| ||||    
T  32137819 tgtcttaccccaaattttgatcacttttctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 32137720  T
Q  541 agaggttactttgaagtacctc 562  Q
    | | ||||||||||||||||||    
T  32137719 ataagttactttgaagtacctc 32137698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 450 - 562
Target Start/End: Complemental strand, 41746760 - 41746636
Alignment:
Q  450 agtgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgac 538  Q
    ||||||||| |||||||||||||||||||| |||||||||| |||||||           ||||| ||  ||||||||||||||||||| |||||||| |    
T  41746760 agtgtcatatcccaaattttgaccacttttatctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggc 41746661  T
Q  539 -aaagaggttactttgaagtacctc 562  Q
     ||||||||||||||||||||||||    
T  41746660 aaaagaggttactttgaagtacctc 41746636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Original strand, 28457629 - 28457674
Alignment:
Q  514 tcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtac 559  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  28457629 tcgtcgtttcagacgaaatttcgacagagaggttactttgaagtac 28457674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 857 - 901
Target Start/End: Complemental strand, 41746336 - 41746292
Alignment:
Q  857 caaccctaatgctataaaagcaaacctgcaaaatacagaaaggga 901  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  41746336 caaccctaatgctataaaagcaagcctgcaaaatacagaaaggga 41746292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 21498965 - 21498918
Alignment:
Q  450 agtgtcataccccaaattttgaccacttttctctattcttacccattt 497  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||    
T  21498965 agtgtcataccccaaattttgaccacttttctctatttttacacattt 21498918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 29221553 - 29221507
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  29221553 tgtcataccccaaattttgactacttttctctatttttacccatttt 29221507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 17381359 - 17381316
Alignment:
Q  134 atcccaccaaagatcaaaagttaagtaatttaaaataatagatg 177  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  17381359 atcccaccaaagatcaaaagtgatgtaatttaaaataatagatg 17381316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 520 - 562
Target Start/End: Original strand, 13462775 - 13462817
Alignment:
Q  520 tttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  13462775 tttcagacgaaatttggataaagaggttactttgaagtacctc 13462817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 43387069 - 43387127
Alignment:
Q  372 caaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    |||||||| ||| |||||| |||| | |||||||||||||||| |||||||||||||||    
T  43387069 caaaatcttaagacattagatatacgagtcatttcacttatatgtttctcaacatctac 43387127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 44320257 - 44320211
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||||||||||||||||||||||||  || |||||||||||    
T  44320257 tgtcataccccaaattttgaccacttttctcgctttttacccatttt 44320211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 562
Target Start/End: Complemental strand, 8241491 - 8241442
Alignment:
Q  513 ttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||||  | |||||||||||| |||||||||    
T  8241491 ttcgtcgtttcagacgaaatttcggtagagaggttactttaaagtacctc 8241442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 31089989 - 31090086
Alignment:
Q  83 acatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    ||||||||||| |||||||| ||||||| ||||| |  |||||| |||| |||| ||||||| ||||||||| ||  ||||| |||||| ||| ||||    
T  31089989 acatgtattttatcaattcaacataacacatctatatgtttctactgtcggatcacaccaaatatcaaaagtgaatgaatttgaaataacagaggttg 31090086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 831 - 895
Target Start/End: Original strand, 28457941 - 28458005
Alignment:
Q  831 tctgcaagatatttccttattctatccaaccctaatgctataaaagcaaacctgcaaaatacaga 895  Q
    |||||||| | ||||||| |||| | |||||||||||||||||||  |||||||||||| |||||    
T  28457941 tctgcaagttgtttcctttttctcttcaaccctaatgctataaaataaaacctgcaaaacacaga 28458005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 829 - 889
Target Start/End: Complemental strand, 32137421 - 32137361
Alignment:
Q  829 tttctgcaagatatttccttattctatccaaccctaatgctataaaagcaaacctgcaaaa 889  Q
    ||||| |||| ||||||||| |||  | ||||||||||||||||||| |||||||||||||    
T  32137421 tttctacaagttatttcctttttcccttcaaccctaatgctataaaatcaaacctgcaaaa 32137361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 180
Target Start/End: Original strand, 3837667 - 3837781
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaattt-a 165  Q
    ||||||||| ||||   |||||||||||| || ||||||||||| |||| || ||||| |||||   ||||||||||| | ||||| | ||| ||||| |    
T  3837667 ttaaaatgtttaataatcatgtattttgtaaactcagcataacacatctgcatttttccattgttgcatcccaccaaataccaaaattaaaggaatttaa 3837766  T
Q  166 aaataatagatgttg 180  Q
    |||||||||| ||||    
T  3837767 aaataatagaggttg 3837781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 16852332 - 16852290
Alignment:
Q  112 atctacaattttctattgtcagatcccaccaaagatcaaaagt 154  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||    
T  16852332 atctacatttttctattgtaagatctcaccaaagatcaaaagt 16852290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 452 - 486
Target Start/End: Complemental strand, 20314092 - 20314058
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctatt 486  Q
    |||||||||||||||||||||||||||| ||||||    
T  20314092 tgtcataccccaaattttgaccacttttttctatt 20314058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 520 - 562
Target Start/End: Original strand, 22460026 - 22460068
Alignment:
Q  520 tttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||    
T  22460026 tttcaaacgaaatttcgacagagaggttactttggagtacctc 22460068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 732
Target Start/End: Complemental strand, 13806056 - 13806019
Alignment:
Q  695 aatgaagtcaataagtctgaaaatttcagcaagggtcc 732  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  13806056 aatgaagtcaataagtccgaaaagttcagcaagggtcc 13806019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 22541163 - 22541052
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaa 166  Q
    ||||||||| ||||  ||||||||||||| || ||| ||||||  ||||  ||||||| ||||||| ||||| |||||||  | |||| ||| ||||| |    
T  22541163 ttaaaatgtctaataaacatgtattttgtaaactcatcataactcatct-gaattttccattgtcacatccc-ccaaagactagaagtgaaggaatttga 22541066  T
Q  167 aataatagatgttg 180  Q
    ||||||||||||||    
T  22541065 aataatagatgttg 22541052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 2e-85; HSPs: 44)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 691 - 896
Target Start/End: Complemental strand, 20372120 - 20371916
Alignment:
Q  691 gtccaatgaagtcaataagtctgaaaatttcagcaagggtccatttctcnnnnnnnncttttcttctccgaacgccacatgtttaggcaagttcataggg 790  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||        ||||||||||||| |||||||||||||||| ||||||||||||    
T  20372120 gtccaatgaagtcaataagtccgaaaatttcagcaagggtccatttttcttttttt-cttttcttctccgtacgccacatgtttagggaagttcataggg 20372022  T
Q  791 tcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatgctataaaagcaaacctgcaaaat 890  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20372021 tcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatgctataaaagcaaacctgcaaaat 20371922  T
Q  891 acagaa 896  Q
    ||||||    
T  20371921 acagaa 20371916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 762 - 889
Target Start/End: Original strand, 20621849 - 20621976
Alignment:
Q  762 acgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaacc 861  Q
    ||||| |||||||||||||||||||||||||||  ||||||||||||||||||||  |||||| |||| |||||||| || ||||||||||| | |||||    
T  20621849 acgccgcatgtttaggcaagttcatagggtcaagtttttgttgccaaatccagcagctcagtaataatctctgcaagttacttccttattctcttcaacc 20621948  T
Q  862 ctaatgctataaaagcaaacctgcaaaa 889  Q
    |||||||||||||| |||||||||||||    
T  20621949 ctaatgctataaaatcaaacctgcaaaa 20621976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 768 - 889
Target Start/End: Original strand, 25483929 - 25484050
Alignment:
Q  768 catgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatg 867  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||  | |||||||  |||||||| |||||||||||| ||| ||||||||||     
T  25483929 catgtttaggcaagttcatagggtcaagtttttgttgccaaatccagcaatgcggtagtaacctctgcaagttatttccttattttattcaaccctaatt 25484028  T
Q  868 ctataaaagcaaacctgcaaaa 889  Q
     ||||||| |||||||||||||    
T  25484029 gtataaaatcaaacctgcaaaa 25484050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 750 - 897
Target Start/End: Complemental strand, 26719474 - 26719327
Alignment:
Q  750 tttcttctccgaacgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttcctta 849  Q
    ||||| ||||| ||||| | |||| || ||| |||| ||||||||  ||||||| |||||||  | ||  | ||||||| ||||||||| ||||||||||    
T  26719474 tttctcctccgtacgcctcgtgttcagccaatttcacagggtcaattttttgtttccaaatctgggaacgcggtagtaacttctgcaagttatttcctta 26719375  T
Q  850 ttctatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 897  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26719374 ttcaatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 26719327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 750 - 897
Target Start/End: Complemental strand, 26733562 - 26733415
Alignment:
Q  750 tttcttctccgaacgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttcctta 849  Q
    ||||| ||||| ||||| | |||| || ||| |||| ||||||||  ||||||| |||||||  | ||  | ||||||| ||||||||| ||||||||||    
T  26733562 tttctcctccgtacgcctcgtgttcagccaatttcacagggtcaattttttgtttccaaatctgggaacgcggtagtaacttctgcaagttatttcctta 26733463  T
Q  850 ttctatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 897  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26733462 ttcaatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 26733415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 14582925 - 14583046
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||| ||  |||||||||||||||||||||||||| | |||    
T  14582925 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 14583024  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  14583025 ggaggttactttgaagtacctc 14583046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 15944622 - 15944501
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccca-----------tttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||           ||||||||| ||  |||||||||||||||||||||||||| | |||    
T  15944622 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 15944523  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  15944522 ggaggttactttgaagtacctc 15944501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 15953137 - 15953016
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccca-----------tttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||           ||||||||| ||  |||||||||||||||||||||||||| | |||    
T  15953137 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 15953038  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  15953037 ggaggttactttgaagtacctc 15953016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 20372378 - 20372258
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||           ||||| || |||||||||||||||||||||||||||||||||    
T  20372378 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgacaa 20372279  T
Q  541 agaggttactttgaagtacctc 562  Q
    | ||||||||||||||||||||    
T  20372278 a-aggttactttgaagtacctc 20372258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 20621518 - 20621639
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccca-----------tttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||           ||||| ||| ||  ||||||||||||||||||| ||||||||||||    
T  20621518 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtgtttttgaagtcgggaattttcgtcgtttcagacaaaatttcgacaa 20621617  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||| ||||||||||||||||||    
T  20621618 agatgttactttgaagtacctc 20621639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 35138593 - 35138714
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||| ||  |||||||||||||||||||||||||| | |||    
T  35138593 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 35138692  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  35138693 ggaggttactttgaagtacctc 35138714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 35146929 - 35147050
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||| ||  |||||||||||||||||||||||||| | |||    
T  35146929 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 35147028  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  35147029 ggaggttactttgaagtacctc 35147050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 41233909 - 41233788
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccca-----------tttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||           ||||||||| ||  |||||||||||||||||||||||||| | |||    
T  41233909 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41233810  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  41233809 ggaggttactttgaagtacctc 41233788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 31964683 - 31964840
Alignment:
Q  13 catcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaa 112  Q
    |||||| ||| | |||||||||||||||||||||||| ||||| | || || |||| |||||| ||||   |||||||||||  || | ||||| ||| |    
T  31964683 catcatgttatggtaagagcaatcacacaagtgagattgacacaatatcttcacttgaaatgtctaataagcatgtattttggtaaattagcattacaca 31964782  T
Q  113 tctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaata 170  Q
    |||||| ||||| ||| ||||||| ||| ||||||||||||| |||||||||||||||    
T  31964783 tctacatttttccattttcagatcacacaaaagatcaaaagtgaagtaatttaaaata 31964840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 757 - 900
Target Start/End: Complemental strand, 34529687 - 34529543
Alignment:
Q  757 tccgaacgccacatgtttaggcaagttcatagggtcaaagtttt-gttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctat 855  Q
    |||| ||||| |||||| || ||| |||||||||||||  |||| |||||||||||| | ||  | ||||||| |||||| || ||||||||| ||| ||    
T  34529687 tccgtacgcctcatgttcagccaatttcatagggtcaatttttttgttgccaaatccgggaacgcggtagtaacttctgccagttatttccttgttcaat 34529588  T
Q  856 ccaaccctaatgctataaaagcaaacctgcaaaatacagaaaggg 900  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||    
T  34529587 ccaaccctaatactataaaagcagacctgcaaaacacagaaaggg 34529543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 757 - 900
Target Start/End: Complemental strand, 34543660 - 34543516
Alignment:
Q  757 tccgaacgccacatgtttaggcaagttcatagggtcaaagtttt-gttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctat 855  Q
    |||| ||||| |||||| || ||| |||||||||||||  |||| |||||||||||| | ||  | ||||||| |||||| || ||||||||| ||| ||    
T  34543660 tccgtacgcctcatgttcagccaatttcatagggtcaatttttttgttgccaaatccgggaacgcggtagtaacttctgccagttatttccttgttcaat 34543561  T
Q  856 ccaaccctaatgctataaaagcaaacctgcaaaatacagaaaggg 900  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||    
T  34543560 ccaaccctaatactataaaagcagacctgcaaaacacagaaaggg 34543516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 451 - 562
Target Start/End: Complemental strand, 42574619 - 42574497
Alignment:
Q  451 gtgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgaca 539  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||           |||||  || |||||||| ||||||||||||||||| | ||    
T  42574619 gtgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggca 42574520  T
Q  540 aagaggttactttgaagtacctc 562  Q
    |||||||||||||||||||||||    
T  42574519 aagaggttactttgaagtacctc 42574497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 38168422 - 38168301
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||| | |||    
T  38168422 tgtcatactccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 38168323  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  38168322 ggaggttactttgaagtacctc 38168301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 42565994 - 42565873
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||           |||||  || |||||||| ||||||||||||||||| | |||    
T  42565994 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 42565895  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  42565894 agaggttactttgaagtacctc 42565873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 452 - 552
Target Start/End: Original strand, 25483601 - 25483712
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||| ||           |||||||||| ||| |||||||||||||||||||||||| ||||||     
T  25483601 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25483700  T
Q  541 agaggttacttt 552  Q
    ||||||||||||    
T  25483701 agaggttacttt 25483712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 452 - 552
Target Start/End: Original strand, 25491207 - 25491318
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||| ||           |||||||||| ||| |||||||||||||||||||||||| ||||||     
T  25491207 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25491306  T
Q  541 agaggttacttt 552  Q
    ||||||||||||    
T  25491307 agaggttacttt 25491318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 451 - 498
Target Start/End: Complemental strand, 17687464 - 17687417
Alignment:
Q  451 gtgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17687464 gtgtcataccccaaattttgaccacttttctctattcttacccatttt 17687417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 494 - 562
Target Start/End: Original strand, 35037909 - 35037977
Alignment:
Q  494 atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    |||||||||| ||  ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||    
T  35037909 atttttaaagtcgggaattttcgtcgtttcagacgaaatttcgatagagaggttactttgaaatacctc 35037977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 452 - 550
Target Start/End: Original strand, 44372705 - 44372814
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||           ||||| ||  |||||||||||||| |||||||||||||||||    
T  44372705 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcgacaa 44372804  T
Q  541 agaggttact 550  Q
    ||||||||||    
T  44372805 agaggttact 44372814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 452 - 550
Target Start/End: Original strand, 44388616 - 44388725
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||           ||||| ||  |||||||||||||| |||||||||||||||||    
T  44388616 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcgacaa 44388715  T
Q  541 agaggttact 550  Q
    ||||||||||    
T  44388716 agaggttact 44388725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 494 - 562
Target Start/End: Original strand, 35303790 - 35303858
Alignment:
Q  494 atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    ||||| |||||| | || ||||||||||||||||||||||||| || |||||||| |||||||||||||    
T  35303790 attttaaaagccaagaaatttcgtcgtttcagacgaaatttcggcagagaggttaatttgaagtacctc 35303858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 14909143 - 14909059
Alignment:
Q  89 attttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatag 174  Q
    |||||||||| |||||||| || ||||||||||||| ||||||| ||||||||||| | ||||| | | ||||||| |||||||||    
T  14909143 attttgtcaactcagcatatcacatctacaattttccattgtcaaatcccaccaaa-aacaaaaatgaggtaatttgaaataatag 14909059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 452 - 497
Target Start/End: Complemental strand, 42249520 - 42249475
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccattt 497  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  42249520 tgtcataccccaaattttgaccacttttctctatttttacacattt 42249475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 6911684 - 6911589
Alignment:
Q  85 atgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    ||||||| |||||| | || |||||| ||| ||| ||||  ||||||| || |||||||||||||||| | ||| |||||||||||||||| ||||    
T  6911684 atgtattgtgtcaacttagtataacacatcaacattttttcattgtcacatgccaccaaagatcaaaattgaagaaatttaaaataatagaggttg 6911589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 24285695 - 24285742
Alignment:
Q  451 gtgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    ||||||||||||||||||||||||||||||| |||| |||| ||||||    
T  24285695 gtgtcataccccaaattttgaccacttttctttatttttacacatttt 24285742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 451 - 498
Target Start/End: Complemental strand, 34070670 - 34070623
Alignment:
Q  451 gtgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    ||||||||||||||||||||| |||||||||||||| |||| ||||||    
T  34070670 gtgtcataccccaaattttgatcacttttctctatttttacacatttt 34070623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 3395422 - 3395480
Alignment:
Q  372 caaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    |||||||| ||| |||||| |||||| ||||| |||||||||| |||||||||||||||    
T  3395422 caaaatcttaagacattagatatatgagtcatctcacttatatgtttctcaacatctac 3395480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 24292372 - 24292418
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||||||||||||||||||||||| |||| |||| ||||||    
T  24292372 tgtcataccccaaattttgaccacttttctttatttttacacatttt 24292418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 27879238 - 27879169
Alignment:
Q  11 atcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaat 80  Q
    ||||||||||||||  || ||||||||| |||||||||| ||||| |||| ||||||| |||||| ||||    
T  27879238 atcatcatattaggcaaaaagcaatcacgcaagtgagattgacacaacatcttaacttcaaatgtctaat 27879169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 36720491 - 36720386
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaa 166  Q
    |||||||||||||    |||||||||| |||| ||| ||  ||| ||||||| || || ||||||||||||||||||| |  |||||| ||| |||||||    
T  36720491 ttaaaatgtgtaacaatcatgtattttttcaactcaacaggacacatctacatttctccattgtcagatcccaccaaaaactaaaagtgaagaaatttaa 36720392  T
Q  167 aataat 172  Q
    ||||||    
T  36720391 aataat 36720386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 6911431 - 6911367
Alignment:
Q  11 atcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgt 75  Q
    ||||||||||||||||||  |||||||| ||||||| || ||||| |||| || |||||||||||    
T  6911431 atcatcatattaggttaaaggcaatcacgcaagtgaaattgacaccacatcttcacttaaaatgt 6911367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 26903396 - 26903352
Alignment:
Q  454 tcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||| |||||||||||||||||||||||| |||| ||||||    
T  26903396 tcataccctaaattttgaccacttttctctatttttacacatttt 26903352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 38796904 - 38796848
Alignment:
Q  370 ttcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacat 426  Q
    |||||||||| ||||||||||  ||||  |||||||||||||||| |||||||||||    
T  38796904 ttcaaaatcttaaggcattagacatattagtcatttcacttatatgtttctcaacat 38796848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 418
Target Start/End: Original strand, 31964948 - 31965095
Alignment:
Q  272 catcataatgtttagacttccaggga-agtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttttat 370  Q
    |||| |||||||  ||||| |||||| || ||||| || |||| ||||||||| | |||||||| || |||||||||||| | | |||||| ||  | ||    
T  31964948 catcgtaatgttgtgactttcagggagagcctaaattgagttggataatcacatttgggtaaaagcacccataaaagtgaaactaacaccacatcctcat 31965047  T
Q  371 tcaaaatctaaaggcattaggtatatgggtcatttcacttatattttt 418  Q
     |||||| | |||||||||| ||| || || || ||||||||||||||    
T  31965048 ccaaaattttaaggcattagttatttgtgtaatctcacttatattttt 31965095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 45056001 - 45056092
Alignment:
Q  84 catgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataataga 175  Q
    |||||||||||| || | | |||||||  |||||| |||||||||   ||||||||||||||| ||||||| |||  |||||||||| ||||    
T  45056001 catgtattttgttaacttaacataacacgtctacatttttctattactagatcccaccaaagaccaaaagtgaaggtatttaaaatagtaga 45056092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 14869193 - 14869151
Alignment:
Q  112 atctacaattttctattgtcagatcccaccaaagatcaaaagt 154  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||    
T  14869193 atctacatttttctattgtaagatctcaccaaagatcaaaagt 14869151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 29652131 - 29652041
Alignment:
Q  90 ttttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    ||||||||| ||||||||||| ||| ||||||| | ||| |||  | |||||||||  ||||||| ||  |||||||||||||||| ||||    
T  29652131 ttttgtcaactcagcataacatatcgacaatttaccattttcacttgccaccaaagtccaaaagtgaataaatttaaaataatagacgttg 29652041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 5788532 - 5788641
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttct-attgtcagatcccaccaaagatcaaaagttaagtaattta 165  Q
    ||||||||| ||||  ||||||||||||| |||  |||| |||| | ||||| |||| | ||||||| |||  ||||||||  |||||| ||| ||||||    
T  5788532 ttaaaatgtctaataaacatgtattttgttaatgtagcagaacacacctacatttttttcattgtcaaatcgtaccaaagaataaaagtgaagaaattta 5788631  T
Q  166 aaataataga 175  Q
    ||||||||||    
T  5788632 aaataataga 5788641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 38797174 - 38797089
Alignment:
Q  88 tattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataata 173  Q
    ||||||||||| ||| ||||||| ||| ||| |||||||| || | ||| ||||||||| | ||||| ||| |||| |||||||||    
T  38797174 tattttgtcaactcaacataacacatcaacatttttctatggttaaatctcaccaaagaccgaaagtgaaggaattcaaaataata 38797089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 4e-84; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 26288139 - 26288309
Alignment:
Q  10 catcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26288139 catcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgagtaatggacatgtattttgtcaattcagcataac 26288238  T
Q  110 aaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26288239 aaatctacgattttcgattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 26288309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 55051348 - 55051179
Alignment:
Q  11 atcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataaca 110  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  55051348 atcatcatattaggttaagagtaatcacacaagtgagagcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcaacatagca 55051249  T
Q  111 aatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55051248 aatctacaattttccattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 55051179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 268 - 430
Target Start/End: Complemental strand, 55051104 - 55050942
Alignment:
Q  268 cacccatcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 367  Q
    |||||||||||||||||||||| |  ||| |||  |||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  55051104 cacccatcataatgtttagactcctgggggagttgaaacagggttgtataatcacaatagggtaaagtcaaccataaaagtgagattcacaccatatttt 55051005  T
Q  368 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  55051004 tattcaaaatctaaagacattaggtatatgggtcatttcacttatatttttctcatcatctac 55050942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 268 - 417
Target Start/End: Original strand, 26288398 - 26288547
Alignment:
Q  268 cacccatcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 367  Q
    |||||||||||||||||||||| || ||| |||  |||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  26288398 cacccatcataatgtttagactcccgggggagttaaaacagggttgtataatcacagtagggtaaagtcaaccataaaagtgaaattcacaccatatttt 26288497  T
Q  368 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26288498 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttt 26288547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 6555784 - 6555624
Alignment:
Q  13 catcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaa 112  Q
    |||||||||| | ||||||||||||||||||||||||  |||| |||| || |||| |||||| ||||   ||||||||||| ||| ||| ||| ||| |    
T  6555784 catcatattatggtaagagcaatcacacaagtgagattaacaccacatcttcacttgaaatgtctaataagcatgtattttgccaactcatcattacaca 6555685  T
Q  113 tctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataata 173  Q
    |||||| ||||| ||| ||||||| ||||||||| ||||||| ||||||||||||||||||    
T  6555684 tctacatttttccattttcagatcacaccaaagaccaaaagtgaagtaatttaaaataata 6555624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 8094347 - 8094226
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||| | |||    
T  8094347 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 8094248  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  8094247 agaggttactttgaagtacctc 8094226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 8103153 - 8103032
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||| | |||    
T  8103153 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 8103054  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  8103053 agaggttactttgaagtacctc 8103032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 12996476 - 12996597
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||||| || |||||||||||||||||||||||||||||  |     
T  12996476 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggtag 12996575  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  12996576 agaggttactttgaagtacctc 12996597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 451 - 562
Target Start/End: Complemental strand, 4523746 - 4523624
Alignment:
Q  451 gtgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgaca 539  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||           ||||| ||  |||||||||||||||||||||||||| ||||    
T  4523746 gtgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 4523647  T
Q  540 aagaggttactttgaagtacctc 562  Q
    |||||||||||||||||||||||    
T  4523646 aagaggttactttgaagtacctc 4523624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 27343756 - 27343635
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||           ||||| ||  ||||||||||||||||||||||||||| |||     
T  27343756 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacag 27343657  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  27343656 agaggttactttgaagtacctc 27343635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 315601 - 315441
Alignment:
Q  13 catcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaa 112  Q
    |||||||||| | ||||||||||||||||||||| || ||||| |||| || |||| |||||| ||||   ||||||||||| ||| ||| ||| ||| |    
T  315601 catcatattatggtaagagcaatcacacaagtgaaattgacaccacatcttcacttgaaatgtctaataagcatgtattttgccaactcaacattacaca 315502  T
Q  113 tctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataata 173  Q
    |||||| ||||  ||| ||||||  ||||||||| |||| || ||||||||||||||||||    
T  315501 tctacattttttcattttcagatgacaccaaagaccaaaggtgaagtaatttaaaataata 315441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 3774105 - 3773973
Alignment:
Q  14 atcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaat 113  Q
    |||||| |||||| |||||||||||| |||| |||| ||||| |||| || ||||||||||| ||||  | |||||||||||||||||| | |||||  |    
T  3774105 atcatactaggttgagagcaatcacaaaagtaagattgacacaacatgttcacttaaaatgtttaataaatatgtattttgtcaattcaacctaacacgt 3774006  T
Q  114 ctacaattttctattgtcagatcccaccaaaga 146  Q
    |||||||||||  |||| |||||||||||||||    
T  3774005 ctacaattttcccttgttagatcccaccaaaga 3773973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 21532369 - 21532249
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||           ||||| || |||||||||||||||||||||||||||||||||    
T  21532369 tgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgacaa 21532270  T
Q  541 agaggttactttgaagtacctc 562  Q
    | || |||||||||||||||||    
T  21532269 a-agattactttgaagtacctc 21532249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 52295604 - 52295725
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||| ||  ||||||||||||||||||| |||||||| ||     
T  52295604 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcag 52295703  T
Q  541 agaggttactttgaagtacctc 562  Q
    |||| |||||||||||||||||    
T  52295704 agagattactttgaagtacctc 52295725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 12428543 - 12428422
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||           |||||||  ||||||||||  ||||||||||||||||||| |    
T  12428543 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacga 12428444  T
Q  541 agaggttactttgaagtacctc 562  Q
    |||| |||||||||||||||||    
T  12428443 agagtttactttgaagtacctc 12428422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 10638328 - 10638374
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  10638328 tgtcataccccaaattttgaccacttttctctatttttacccatttt 10638374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 180
Target Start/End: Original strand, 42729137 - 42729250
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaa 166  Q
    ||||||||| |||| | ||||||||||||||| || |||  ||| ||||||  || ||  |||||||||||||||||| || |||||| ||| |||||||    
T  42729137 ttaaaatgtctaatagtcatgtattttgtcaactctgcaggacacatctacgtttgtccgttgtcagatcccaccaaatattaaaagtgaagaaatttaa 42729236  T
Q  167 aataatagatgttg 180  Q
    ||||||||| ||||    
T  42729237 aataatagaggttg 42729250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 782 - 895
Target Start/End: Complemental strand, 47522318 - 47522205
Alignment:
Q  782 ttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatgctataaaagcaaac 881  Q
    |||||||||||||| ||||||| |||||||||| ||  | || |     |||||||| | |||||||||||| | ||||||||||||||||||| |||||    
T  47522318 ttcatagggtcaaacttttgtttccaaatccagtaacacggttgctgcctctgcaagttgtttccttattcttttcaaccctaatgctataaaatcaaac 47522219  T
Q  882 ctgcaaaatacaga 895  Q
    |||||||| |||||    
T  47522218 ctgcaaaacacaga 47522205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 772 - 875
Target Start/End: Complemental strand, 1877449 - 1877348
Alignment:
Q  772 tttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatgctat 871  Q
    ||||||||  ||||||||||||||    |||||||||||||||| | |||||||||||  ||||||| |||||||||||| | | ||||||||||| |||    
T  1877449 tttaggcagattcatagggtcaaatgaatgttgccaaatccagccactcagtagtaat--ctgcaagttatttccttattatcttcaaccctaatggtat 1877352  T
Q  872 aaaa 875  Q
    ||||    
T  1877351 aaaa 1877348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 772 - 875
Target Start/End: Complemental strand, 1891564 - 1891463
Alignment:
Q  772 tttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatgctat 871  Q
    ||||||||  ||||||||||||||    |||||||||||||||| | |||||||||||  ||||||| |||||||||||| | | ||||||||||| |||    
T  1891564 tttaggcagattcatagggtcaaatgaatgttgccaaatccagccactcagtagtaat--ctgcaagttatttccttattatcttcaaccctaatggtat 1891467  T
Q  872 aaaa 875  Q
    ||||    
T  1891466 aaaa 1891463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 494 - 562
Target Start/End: Original strand, 33188818 - 33188886
Alignment:
Q  494 atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    ||||||||||| || |||||||||||||||||||||||||||  |||  ||||||||||||| ||||||    
T  33188818 atttttaaagctgagaattttcgtcgtttcagacgaaatttcagcaagaaggttactttgaattacctc 33188886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 272 - 418
Target Start/End: Complemental strand, 315305 - 315159
Alignment:
Q  272 catcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttttatt 371  Q
    |||| |||||||  |||||||| ||  | |||||||| |||| ||||||||| | |||||||| || |||||||||||| | | |||||| ||  | ||     
T  315305 catcgtaatgttgtgacttccaagggggcctaaactgagttggataatcacattcgggtaaaaacatccataaaagtgaaactaacaccacatcctcatc 315206  T
Q  372 caaaatctaaaggcattaggtatatgggtcatttcacttatattttt 418  Q
    |||||| | |||||||||| ||| || ||||| ||||||||||||||    
T  315205 caaaattttaaggcattagttatttgtgtcatctcacttatattttt 315159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 17449795 - 17449682
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaa 166  Q
    ||||||||| ||||  || ||||||||||||| | |||||||   |||||||||||||  || || ||| ||| |||||| ||||||| ||| ||||| |    
T  17449795 ttaaaatgtctaattaacgtgtattttgtcaacttagcataatgcatctacaattttcccttttccgattccatcaaagaccaaaagtgaagcaatttca 17449696  T
Q  167 aataatagatgttg 180  Q
    ||||||||||||||    
T  17449695 aataatagatgttg 17449682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 901 - 935
Target Start/End: Complemental strand, 21531867 - 21531833
Alignment:
Q  901 acaagaaagaaaaccctaacggcactgttcacgca 935  Q
    |||||||||||||||||||||||||||||||||||    
T  21531867 acaagaaagaaaaccctaacggcactgttcacgca 21531833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 50158533 - 50158420
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaa 166  Q
    ||||||||| ||||  ||||||||||| |||| | |  | |||| ||||||| ||||| |||||| ||||||| |||||| |||||   ||| ||||| |    
T  50158533 ttaaaatgtctaataaacatgtattttatcaactaaataaaacatatctacatttttccattgtcggatcccaacaaagaccaaaaacaaaggaatttga 50158434  T
Q  167 aataatagatgttg 180  Q
    ||||||||||||||    
T  50158433 aataatagatgttg 50158420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 24182177 - 24182269
Alignment:
Q  83 acatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataataga 175  Q
    ||||||| ||||| |||||| |||||||  |||||| ||||||||    ||||||||||||||||||||||| |||  || ||||||| ||||    
T  24182177 acatgtaatttgttaattcaacataacacgtctacatttttctatgactagatcccaccaaagatcaaaagtgaaggtatctaaaatagtaga 24182269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 513 - 562
Target Start/End: Original strand, 3424403 - 3424450
Alignment:
Q  513 ttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    ||||||||| |||||||||||||| ||  |||||||||||||||||||||    
T  3424403 ttcgtcgttccagacgaaatttcggca--gaggttactttgaagtacctc 3424450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 22679005 - 22679063
Alignment:
Q  93 tgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaa 151  Q
    |||||||||||||||| | ||||  | ||||||||| ||||||||| ||||||||||||    
T  22679005 tgtcaattcagcataaaacatctgaagttttctattttcagatcccgccaaagatcaaa 22679063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 26289664 - 26289774
Alignment:
Q  70 aaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaat 169  Q
    |||||||||||  |||||| |||||| || ||||||||||| |||| |||||||| |||| ||  | || ||||||  |||||||| |  |||||||| |    
T  26289664 aaatgtgtaataaacatgtcttttgtgaactcagcataacacatctgcaattttccattgccacttgccgccaaagtccaaaagttgatgaatttaaatt 26289763  T
Q  170 aatagatgttg 180  Q
    |||||| ||||    
T  26289764 aatagaagttg 26289774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 180
Target Start/End: Original strand, 52542532 - 52542646
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaattt-a 165  Q
    ||||||||| ||||   |||||||||||| || |||| |||||| |||| || ||||| ||||| | ||||||||||| | ||||| | ||| ||||| |    
T  52542532 ttaaaatgtttaataatcatgtattttgtaaactcaggataacacatctgcatttttcaattgttacatcccaccaaataccaaaattaaaggaatttaa 52542631  T
Q  166 aaataatagatgttg 180  Q
    |||||||||| ||||    
T  52542632 aaataatagaggttg 52542646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 12402920 - 12402957
Alignment:
Q  509 aattttcgtcgtttcagacgaaatttcgacaaagaggt 546  Q
    |||||||||||||||||||||||||||| || ||||||    
T  12402920 aattttcgtcgtttcagacgaaatttcggcagagaggt 12402957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 8e-73; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 23408205 - 23408371
Alignment:
Q  11 atcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataaca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  23408205 atcatcatattaggttaagagcaatcacacaagtgagatcgacacttcatattaacttaaaatgtgtaatggacatgtattttgtcaatt---cataaca 23408301  T
Q  111 aatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23408302 aatctacaatttcccattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataattgatgttg 23408371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 691 - 897
Target Start/End: Complemental strand, 20532480 - 20532275
Alignment:
Q  691 gtccaatgaagtcaataagtctgaaaatttcagcaagggtccatttctcnnnnnnnncttttcttctccgaacgccacatgtttaggcaagttcataggg 790  Q
    |||||| |||||||||||||| |||||||||||||||||||||||| ||        | ||||||||||| ||||||||||||||||||| |||||||||    
T  20532480 gtccaacgaagtcaataagtccgaaaatttcagcaagggtccatttttcttttttt-catttcttctccgtacgccacatgtttaggcaaattcataggg 20532382  T
Q  791 tcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatgctataaaagcaaacctgcaaaat 890  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20532381 tcaaagttttgttgccaaatccagcaactcagtagtaatctctgcaagttatttccttgttctatccaaccctaatgctataaaagcaaacctgcaaaat 20532282  T
Q  891 acagaaa 897  Q
    |||||||    
T  20532281 acagaaa 20532275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 268 - 430
Target Start/End: Original strand, 23408459 - 23408621
Alignment:
Q  268 cacccatcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 367  Q
    |||| |||||||||||||||||||| ||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23408459 cacctatcataatgtttagacttccgggggagtataaactgggttgtataatcatagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 23408558  T
Q  368 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  23408559 aattcaaaatctaaagacattaggtatatgggtcatttcacttatatttttctcatcatctac 23408621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 272 - 430
Target Start/End: Original strand, 9450579 - 9450738
Alignment:
Q  272 catcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttttatt 371  Q
    ||||||||| ||  ||||| | ||| |||||||||||||||||||||||||| |||| ||||||||| || |||||||||||| |||  |||||||||||    
T  9450579 catcataatcttgtgactttcgggggagtctaaactgggttgtataatcacaataggctaaaatcaagcacaaaagtgagatttacattatatttttatt 9450678  T
Q  372 caaaatc-taaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    || || | |||||  ||||||||||| | ||||||||||||||||||||||| |||||||    
T  9450679 cagaaccttaaagagattaggtatatagatcatttcacttatatttttctcatcatctac 9450738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 797 - 897
Target Start/End: Complemental strand, 19828255 - 19828155
Alignment:
Q  797 ttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatgctataaaagcaaacctgcaaaatacagaa 896  Q
    ||||||| |||||||| | ||  | ||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19828255 ttttgtttccaaatccgggaacgcggtagtaacttctgcaagttatttccttattcaatccaaccctaatgctataaaagcaaacctgcaaaatacagaa 19828156  T
Q  897 a 897  Q
    |    
T  19828155 a 19828155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 5994699 - 5994820
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||||| || |||||||||||||||||||| |||||| | |||    
T  5994699 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacaaaattttggcaa 5994798  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  5994799 agaggttactttgaagtacctc 5994820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 750 - 897
Target Start/End: Original strand, 27535726 - 27535873
Alignment:
Q  750 tttcttctccgaacgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttcctta 849  Q
    ||||| ||||| ||||| | |||| || ||| |||| ||||||||  ||||||| |||||||  | ||  | ||||||| ||||||||| ||||||||||    
T  27535726 tttctcctccgtacgcctcgtgttcagccaatttcacagggtcaattttttgtttccaaatctgggaaggcggtagtaacttctgcaagttatttcctta 27535825  T
Q  850 ttctatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 897  Q
     || ||||||||||||||||||||||||||||||||||||||||||||    
T  27535826 ctcaatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 27535873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 750 - 897
Target Start/End: Original strand, 27549936 - 27550083
Alignment:
Q  750 tttcttctccgaacgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttcctta 849  Q
    ||||| ||||| ||||| | |||| || ||| |||| ||||||||  ||||||| |||||||  | ||  | ||||||| ||||||||| ||||||||||    
T  27549936 tttctcctccgtacgcctcgtgttcagccaatttcacagggtcaattttttgtttccaaatctgggaaggcggtagtaacttctgcaagttatttcctta 27550035  T
Q  850 ttctatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 897  Q
     || ||||||||||||||||||||||||||||||||||||||||||||    
T  27550036 ctcaatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 27550083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 30824594 - 30824473
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||| | |||    
T  30824594 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30824495  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  30824494 agaggttactttgaagtacctc 30824473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 35091741 - 35091620
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||||| || ||||||||||||||||||||||||||| | |||    
T  35091741 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcggaaattttcgtcgtttcagacgaaattttggcaa 35091642  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  35091641 ggaggttactttgaagtacctc 35091620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 450 - 562
Target Start/End: Original strand, 13825701 - 13825824
Alignment:
Q  450 agtgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgac 538  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||           ||||| |   ||||||||||||||||||||||||||||||    
T  13825701 agtgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcaggaattttcgtcgtttcagacgaaatttcgac 13825800  T
Q  539 aaagaggttactttgaagtacctc 562  Q
    | ||||||||||||||||||||||    
T  13825801 agagaggttactttgaagtacctc 13825824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 9450332 - 9450486
Alignment:
Q  19 attaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctaca 118  Q
    |||||| |||||||||||| ||| ||||||| ||||| |  |||||||||||||||  ||| || ||||||||||||       ||||||||||||||||    
T  9450332 attaggctaagagcaatcatacacgtgagattgacaccatgtattaacttaaaatggctaaggg-catgtattttgttg-----gcataacaaatctaca 9450425  T
Q  119 attttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgtt 179  Q
    |||||| ||||||||||||||| | ||||||||||||||||||||| ||||  ||||||||    
T  9450426 attttccattgtcagatcccactagagatcaaaagttaagtaatttgaaatcgtagatgtt 9450486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 5004061 - 5004182
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||| ||  |||||||||||||||||||||||||| | |||    
T  5004061 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 5004160  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  5004161 ggaggttactttgaagtacctc 5004182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 15391676 - 15391555
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||| |||||||||||||||||||||||||| ||| ||||||||           |||||||   ||||||||||||||||||||||||||||||||    
T  15391676 tgtcatatcccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagccaggaattttcgtcgtttcagacgaaatttcgacaa 15391577  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  15391576 agaggttactttgaagtacctc 15391555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 11279837 - 11279958
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||           |||||  || |||||||| ||||||||||||||||| | |||    
T  11279837 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 11279936  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  11279937 agaggttactttgaagtacctc 11279958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 25550295 - 25550416
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||| ||  |||||||||||||||| ||||||||| | ||     
T  25550295 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcaaacgaaattttggcag 25550394  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  25550395 agaggttactttgaagtacctc 25550416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 33298085 - 33298205
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||           ||||| ||  ||||||||||||||||||||||||||||||||    
T  33298085 tgtcataccccaacttttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 33298184  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||| ||||||||||||||||||    
T  33298185 aga-gttactttgaagtacctc 33298205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 454 - 562
Target Start/End: Original strand, 25991852 - 25991971
Alignment:
Q  454 tcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaaag 542  Q
    ||||||||||||| ||||||||||||||||||||||||||           |||||||||| ||  |||||||||||||||||| |||||||||  | ||    
T  25991852 tcataccccaaatgttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagaagaaatttcggtagag 25991951  T
Q  543 aggttactttgaagtacctc 562  Q
    ||||||||||||||||||||    
T  25991952 aggttactttgaagtacctc 25991971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 25506606 - 25506485
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccca-----------tttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||| ||||||||||||||||||||||           ||||||||| ||  |||||||||||||| ||||||||||||| ||     
T  25506606 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgttttagacgaaatttcggcag 25506507  T
Q  541 agaggttactttgaagtacctc 562  Q
    |||||||||||| || ||||||    
T  25506506 agaggttactttaaaatacctc 25506485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 5489184 - 5489138
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5489184 tgtcataccccaaattttgaccacttttctctattcttacccatttt 5489138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 23925335 - 23925381
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23925335 tgtcataccccaaattttgaccacttttctctattcttacccatttt 23925381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 13490193 - 13490239
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||    
T  13490193 tgtcataccccaaattttgaccacttttctctatttttatccatttt 13490239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 782 - 889
Target Start/End: Original strand, 25550639 - 25550746
Alignment:
Q  782 ttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatgctataaaagcaaac 881  Q
    |||||||||||||| ||||||| |||||||||| ||  | || |     |||||||| | ||||||| |||| | ||||||||||||||||||| |||||    
T  25550639 ttcatagggtcaaacttttgtttccaaatccagtaacacggttgctgcctctgcaagttgtttcctttttctcttcaaccctaatgctataaaatcaaac 25550738  T
Q  882 ctgcaaaa 889  Q
    ||||||||    
T  25550739 ctgcaaaa 25550746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 831 - 889
Target Start/End: Original strand, 25992255 - 25992313
Alignment:
Q  831 tctgcaagatatttccttattctatccaaccctaatgctataaaagcaaacctgcaaaa 889  Q
    |||||||| | ||||||| |||| | ||||||||||||||||||| |||||||||||||    
T  25992255 tctgcaagttgtttcctttttctcttcaaccctaatgctataaaatcaaacctgcaaaa 25992313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 26526699 - 26526646
Alignment:
Q  509 aattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    |||||||||||||||||||||||| ||| || || |||||||||||| ||||||    
T  26526699 aattttcgtcgtttcagacgaaatatcggcagagtggttactttgaattacctc 26526646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 829 - 889
Target Start/End: Original strand, 5995058 - 5995118
Alignment:
Q  829 tttctgcaagatatttccttattctatccaaccctaatgctataaaagcaaacctgcaaaa 889  Q
    |||||||||  | ||||||| |||| | ||||||||||||||||||| |||||||||||||    
T  5995058 tttctgcaacttgtttcctttttctcttcaaccctaatgctataaaatcaaacctgcaaaa 5995118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 452 - 492
Target Start/End: Original strand, 11053702 - 11053742
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacc 492  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  11053702 tgtcataccccaaattttgaccacttttttctatttttacc 11053742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 3531714 - 3531805
Alignment:
Q  83 acatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatag 174  Q
    |||| |||||||||||  || |||||||  |||||||||||| ||||||| ||  ||||||| | ||||||| ||| ||||| |||||||||    
T  3531714 acatatattttgtcaacccaacataacacttctacaattttcaattgtcacatggcaccaaataccaaaagtgaaggaatttgaaataatag 3531805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 562
Target Start/End: Original strand, 14894926 - 14894993
Alignment:
Q  495 tttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    ||||||||||  | |||||| |||| ||||||||| |||||| ||||||  |||||||||||||||||    
T  14894926 tttttaaagcgaagaatttttgtcgcttcagacgatatttcggcaaagaaattactttgaagtacctc 14894993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 1599799 - 1599741
Alignment:
Q  372 caaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    |||||||| ||| |||||| || ||| ||||| |||||||||| |||||||||||||||    
T  1599799 caaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctac 1599741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 348 - 414
Target Start/End: Complemental strand, 2970491 - 2970425
Alignment:
Q  348 tgagattcacaccatatttttattcaaaatctaaaggcattaggtatatgggtcatttcacttatat 414  Q
    ||||||| |||||| || ||||| |||||| | ||| ||| ||||||||| ||||||||||||||||    
T  2970491 tgagattgacaccacatctttatccaaaattttaagacatgaggtatatgtgtcatttcacttatat 2970425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 3e-72; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 268 - 430
Target Start/End: Original strand, 19816249 - 19816411
Alignment:
Q  268 cacccatcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 367  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19816249 cacccatcataatgtttagacttctgggggagtctaaactgggttgaataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttt 19816348  T
Q  368 tattcaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19816349 tatccaaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcatcatctac 19816411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 748 - 895
Target Start/End: Original strand, 3710145 - 3710292
Alignment:
Q  748 cttttcttctccgaacgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttcct 847  Q
    |||||||||| || ||||| |||||| |||||| |||||||||||||| |||||||||||||||||| ||  | |||||||  |||||||| ||||||||    
T  3710145 cttttcttcttcgtacgcctcatgttcaggcaaattcatagggtcaaatttttgttgccaaatccagtaacgcggtagtaacctctgcaagttatttcct 3710244  T
Q  848 tattctatccaaccctaatgctataaaagcaaacctgcaaaatacaga 895  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||    
T  3710245 tattctattcaaccctaatgctataaaagcaagcctgcaaaatacaga 3710292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 52754846 - 52754687
Alignment:
Q  14 atcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaat 113  Q
    ||||||||| | |||||||||||||||||||||||| ||||| | |  || |||| |||||| ||||  | |||||||||| ||| ||||||||||| ||    
T  52754846 atcatattatggtaagagcaatcacacaagtgagattgacaccataccttcacttgaaatgtctaataaatatgtattttgccaactcagcataacacat 52754747  T
Q  114 ctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataata 173  Q
    ||||| ||||| ||| ||||||| ||||||||| ||||||| ||||||||||||||||||    
T  52754746 ctacatttttccattttcagatcacaccaaagaccaaaagtaaagtaatttaaaataata 52754687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 750 - 897
Target Start/End: Original strand, 39705342 - 39705489
Alignment:
Q  750 tttcttctccgaacgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttcctta 849  Q
    ||||| ||||| ||||| | |||| || ||| |||| ||||||||  ||||||| |||||||  | ||  | ||||||| ||||||||| ||||||||||    
T  39705342 tttctcctccgtacgcctcgtgttcagccaatttcacagggtcaattttttgtttccaaatctgggaacgcggtagtaacttctgcaagttatttcctta 39705441  T
Q  850 ttctatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 897  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39705442 ttcaatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 39705489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 50824352 - 50824473
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||||| || ||||||||||||||||||||||||||||| ||     
T  50824352 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 50824451  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  50824452 agaggttactttgaagtacctc 50824473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 50851508 - 50851387
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||||| || ||||||||||||||||||||||||||||| ||     
T  50851508 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 50851409  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  50851408 agaggttactttgaagtacctc 50851387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 8154709 - 8154588
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||| |||||    
T  8154709 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 8154610  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  8154609 agaggttactttgaagtacctc 8154588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 14538670 - 14538548
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgac-a 539  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||           ||||| ||  |||||||||||||||||||||||||||| | |    
T  14538670 tgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaa 14538571  T
Q  540 aagaggttactttgaagtacctc 562  Q
    |||||||||||||||||||||||    
T  14538570 aagaggttactttgaagtacctc 14538548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 27341400 - 27341279
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||           ||||| ||  |||||||||||||||||||||||||||| ||     
T  27341400 tgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 27341301  T
Q  541 agaggttactttgaagtacctc 562  Q
    | ||||||||||||||||||||    
T  27341300 aaaggttactttgaagtacctc 27341279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 41006556 - 41006677
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||| | |||    
T  41006556 tgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41006655  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  41006656 ggaggttactttgaagtacctc 41006677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 41015336 - 41015457
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||| | |||    
T  41015336 tgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41015435  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  41015436 ggaggttactttgaagtacctc 41015457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 17919199 - 17919320
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccattt-----------ttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||           ||||||||||||||||||||  ||||||||||||||||| |      
T  17919199 tgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatttttaaagccgaaaattttcgttatttcagacgaaatttcgtcgg 17919298  T
Q  541 agaggttactttgaagtacctc 562  Q
    |||||||||||| |||||||||    
T  17919299 agaggttactttaaagtacctc 17919320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 494 - 562
Target Start/End: Complemental strand, 43470565 - 43470497
Alignment:
Q  494 atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    |||||||||||||| ||||||  |||||||||||||||||||| || ||||||||||||||||||||||    
T  43470565 atttttaaagccgagaattttattcgtttcagacgaaatttcggcagagaggttactttgaagtacctc 43470497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 17628264 - 17628311
Alignment:
Q  451 gtgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17628264 gtgtcataccccaaattttgaccacttttctctattcttacccatttt 17628311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 28470282 - 28470162
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||           ||||| |  |||||||||||||||||||||||||||||||||    
T  28470282 tgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcagaaattttcgtcgtttcagacgaaatttcgacaa 28470183  T
Q  541 agaggttactttgaagtacctc 562  Q
    | || ||||| |||||||||||    
T  28470182 a-agattactatgaagtacctc 28470162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 451 - 498
Target Start/End: Complemental strand, 9555174 - 9555127
Alignment:
Q  451 gtgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9555174 gtgtcataccccaaattttgatcacttttctctattcttacccatttt 9555127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 17933655 - 17933776
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||| ||||||||||| ||||||           |||||||||| || ||||||||||  ||||||||||||||||  |      
T  17933655 tgtcataccccaaattttgaccaattttctctatttttacccattttattcgtatttttaaagtcggaaattttcgttatttcagacgaaatttcttcgg 17933754  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  17933755 agaggttactttgaagtacctc 17933776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 9525499 - 9525453
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  9525499 tgtcataccccaaattttgatcacttttctctattcttacccatttt 9525453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 2211238 - 2211285
Alignment:
Q  451 gtgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||    
T  2211238 gtgtcataccctaaattttgaccacttttctctattcttacctatttt 2211285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 857 - 900
Target Start/End: Complemental strand, 14538250 - 14538207
Alignment:
Q  857 caaccctaatgctataaaagcaaacctgcaaaatacagaaaggg 900  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  14538250 caaccctaatgctataaaagcaagcctgcaaaatacagaaaggg 14538207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 34849430 - 34849562
Alignment:
Q  12 tcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaa 111  Q
    ||||||||||| | ||||| |||||||||||  ||||| ||||| ||||||  ||||||||| | |||||  |  ||||||| |||| |||||||||||     
T  34849430 tcatcatattatgctaagaacaatcacacaatggagattgacaccacatatcgacttaaaatatctaatgagc--gtattttttcaactcagcataacac 34849527  T
Q  112 atctacaattttctattgtcagatcccaccaaaga 146  Q
     |||||| ||||| ||| | |||||||||||||||    
T  34849528 ttctacatttttcaattcttagatcccaccaaaga 34849562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 30541 - 30495
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  30541 tgtcataccccaaattttgaccacttttctctatttttacacatttt 30495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 8197761 - 8197715
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  8197761 tgtcataccccaaattttgaccacttttctctatttttacacatttt 8197715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 52752697 - 52752620
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaa 144  Q
    ||||||||| ||||  ||||||||||||| || ||||||||||| ||||| | ||||| ||||||| |||||||||||    
T  52752697 ttaaaatgtctaataaacatgtattttgtaaactcagcataacacatctatatttttccattgtcatatcccaccaaa 52752620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 562
Target Start/End: Complemental strand, 16816216 - 16816149
Alignment:
Q  494 atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    ||||||||||||| ||||||||||  ||||||||||||||| |||  ||||| ||||||||||||||||    
T  16816216 atttttaaagccggaaattttcgttatttcagacgaaattttgacggagagg-tactttgaagtacctc 16816149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 762 - 814
Target Start/End: Complemental strand, 18955430 - 18955378
Alignment:
Q  762 acgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccag 814  Q
    ||||| |||||||||||||||||||||||||||  ||||||| ||||||||||    
T  18955430 acgcctcatgtttaggcaagttcatagggtcaagcttttgtttccaaatccag 18955378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 782 - 889
Target Start/End: Complemental strand, 27341048 - 27340942
Alignment:
Q  782 ttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatgctataaaagcaaac 881  Q
    |||||||||||||| ||||||| |||||||||| | ||  || |   |||||||||  | ||||||| |||| | ||||||||||||||||||| |||||    
T  27341048 ttcatagggtcaaatttttgtttccaaatccagtacatg-gttgctgtttctgcaacttgtttcctttttctcttcaaccctaatgctataaaatcaaac 27340950  T
Q  882 ctgcaaaa 889  Q
    ||||||||    
T  27340949 ctgcaaaa 27340942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 10976143 - 10976229
Alignment:
Q  83 acatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaat 169  Q
    ||||||||||||||||  || ||||||| ||||||| ||||  ||||| ||||||||| ||| ||||||||| ||| ||||| ||||    
T  10976143 acatgtattttgtcaacacatcataacacatctacattttttcattgtaagatcccacgaaatatcaaaagtgaaggaatttgaaat 10976229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 18039011 - 18039057
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||||||||||||||||||||||||  || |||||||||||    
T  18039011 tgtcataccccaaattttgaccacttttctcgctttttacccatttt 18039057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 901 - 935
Target Start/End: Complemental strand, 28469772 - 28469738
Alignment:
Q  901 acaagaaagaaaaccctaacggcactgttcacgca 935  Q
    |||||||||||||||||||||||||||||||||||    
T  28469772 acaagaaagaaaaccctaacggcactgttcacgca 28469738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 32264881 - 32264974
Alignment:
Q  85 atgtattttgtcaattcagcataacaaatctacaattttctattgtcagatc--ccaccaaagatcaaaagttaagtaatttaaaataatagat 176  Q
    |||||||||||||| | | ||||||| || | ||||||||||||||||  ||  |||||||| || |||||| ||| |||||||||||||||||    
T  32264881 atgtattttgtcaactaaccataacacatatgcaattttctattgtcacttccaccaccaaatataaaaagtgaagaaatttaaaataatagat 32264974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 748 - 814
Target Start/End: Original strand, 50824660 - 50824726
Alignment:
Q  748 cttttcttctccgaacgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccag 814  Q
    |||||||||| || | ||| ||| ||||||||| |||||||||||||||  ||||||||||||||||    
T  50824660 cttttcttcttcgtatgcctcatttttaggcaaattcatagggtcaaaggcttgttgccaaatccag 50824726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 748 - 814
Target Start/End: Complemental strand, 50851200 - 50851134
Alignment:
Q  748 cttttcttctccgaacgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccag 814  Q
    |||||||||| || | ||| ||| ||||||||| |||||||||||||||  ||||||||||||||||    
T  50851200 cttttcttcttcgtatgcctcatttttaggcaaattcatagggtcaaaggcttgttgccaaatccag 50851134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 51918 - 51857
Alignment:
Q  14 atcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgt 75  Q
    |||||||||||||||  ||||||||||| || |||| ||||| |||| ||||||||||||||    
T  51918 atcatattaggttaaaggcaatcacacatgtaagattgacaccacatcttaacttaaaatgt 51857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 180
Target Start/End: Original strand, 11655092 - 11655204
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaa 166  Q
    ||||||||| ||||  |||||||||| ||||| | |||| |||| ||||||| |||| ||||||  |||||||||||||| |||||   ||| ||||| |    
T  11655092 ttaaaatgtctaataaacatgtattt-gtcaacttagcagaacacatctacatttttttattgtaggatcccaccaaagaccaaaaacaaaggaatttga 11655190  T
Q  167 aataatagatgttg 180  Q
    ||||||||| ||||    
T  11655191 aataatagaggttg 11655204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 857 - 897
Target Start/End: Complemental strand, 18955347 - 18955307
Alignment:
Q  857 caaccctaatgctataaaagcaaacctgcaaaatacagaaa 897  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  18955347 caaccctaatgctataaaatcaaacctgcaaaacacagaaa 18955307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 18349555 - 18349602
Alignment:
Q  451 gtgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||| ||||||||||||||||| ||||||||||||| |||| ||||||    
T  18349555 gtgtgataccccaaattttgacaacttttctctatttttacacatttt 18349602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 39186214 - 39186151
Alignment:
Q  17 atattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaat 80  Q
    |||||| ||||| |||||||||||||||||||  ||||| ||||||  ||||||||||| ||||    
T  39186214 atattatgttaatagcaatcacacaagtgagactgacaccacatatgcacttaaaatgtctaat 39186151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 6436284 - 6436242
Alignment:
Q  112 atctacaattttctattgtcagatcccaccaaagatcaaaagt 154  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||    
T  6436284 atctacatttttctattgtaagatctcaccaaagatcaaaagt 6436242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 9262212 - 9262170
Alignment:
Q  112 atctacaattttctattgtcagatcccaccaaagatcaaaagt 154  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||    
T  9262212 atctacatttttctattgtaagatctcaccaaagatcaaaagt 9262170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 19817070 - 19817180
Alignment:
Q  70 aaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaat 169  Q
    |||||| ||||  ||||||||||||| || ||||||||||| |||| |||||||| |||| ||  | || ||||||  |||||||| |  |||||||| |    
T  19817070 aaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattgccacttgccgccaaagtccaaaagttgatcaatttaaatt 19817169  T
Q  170 aatagatgttg 180  Q
    |||||| ||||    
T  19817170 aatagaggttg 19817180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 21186747 - 21186793
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||||||||||||||||||||| ||| || ||| |||||||    
T  21186747 tgtcataccccaaattttgaccacttttatctgtttttatccatttt 21186793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 520 - 562
Target Start/End: Original strand, 31276593 - 31276635
Alignment:
Q  520 tttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    ||||| |||||||||||||||  ||||||||||||||||||||    
T  31276593 tttcaaacgaaatttcgacaagaaggttactttgaagtacctc 31276635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 334 - 412
Target Start/End: Original strand, 32971094 - 32971172
Alignment:
Q  334 atcaaccataaaagtgagattcacaccatatttttattcaaaatctaaaggcattaggtatatgggtcatttcacttat 412  Q
    |||||||||| |||||||||| |||||| || ||||  |||||||||||| | |||| |||||| |||||  |||||||    
T  32971094 atcaaccatataagtgagattgacaccacatctttacacaaaatctaaagaccttagttatatgagtcatcacacttat 32971172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 50331928 - 50331986
Alignment:
Q  372 caaaatctaaaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    |||||||| ||| |||||| || ||| ||||| |||||||||| |||||||||||||||    
T  50331928 caaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctac 50331986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 2211307 - 2211360
Alignment:
Q  509 aattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    |||||||||||||| ||||||||||||| |||||||| || ||| || ||||||    
T  2211307 aattttcgtcgtttaagacgaaatttcggcaaagagggtattttaaaatacctc 2211360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 430
Target Start/End: Original strand, 32970441 - 32970486
Alignment:
Q  385 cattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    ||||||||||||||||||| |||||||||| ||| ||| |||||||    
T  32970441 cattaggtatatgggtcatctcacttatatatttttcagcatctac 32970486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 40417921 - 40417872
Alignment:
Q  381 aaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    |||| |||||||||||||| ||| |||||||||| ||||||| |||||||    
T  40417921 aaggaattaggtatatgggccatctcacttatatgtttctcaccatctac 40417872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 418
Target Start/End: Complemental strand, 52754557 - 52754440
Alignment:
Q  301 ctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttttattcaaaatctaaaggcattaggtatatgggt 400  Q
    |||||||| |||| ||||||||| | |||||||| || |||||||||||| | | | |||| ||  | || |||||| | |||||||||| ||| || ||    
T  52754557 ctaaactgagttggataatcacatttgggtaaaagcacccataaaagtgaaactaataccacatcctcatccaaaattttaaggcattagttatttgtgt 52754458  T
Q  401 catttcacttatattttt 418  Q
    ||| |||||| |||||||    
T  52754457 catctcacttgtattttt 52754440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 9e-51; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 29913697 - 29913595
Alignment:
Q  11 atcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29913697 atcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataaca 29913598  T
Q  111 aat 113  Q
    |||    
T  29913597 aat 29913595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 750 - 897
Target Start/End: Complemental strand, 1888657 - 1888510
Alignment:
Q  750 tttcttctccgaacgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttcctta 849  Q
    ||||| ||||| ||||| | |||| || ||| |||| ||||||||  ||||||| |||||||  | ||  | ||||||| ||||||||| ||||||||||    
T  1888657 tttctcctccgtacgcctcgtgttcagccaatttcacagggtcaattttttgtttccaaatctgggaacgcggtagtaacttctgcaagttatttcctta 1888558  T
Q  850 ttctatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 897  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1888557 ttcaatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 1888510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 750 - 897
Target Start/End: Complemental strand, 1902758 - 1902611
Alignment:
Q  750 tttcttctccgaacgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttcctta 849  Q
    ||||| ||||| ||||| | |||| || ||| |||| ||||||||  ||||||| |||||||  | ||  | ||||||| ||||||||| ||||||||||    
T  1902758 tttctcctccgtacgcctcgtgttcagccaatttcacagggtcaattttttgtttccaaatctgggaacgcggtagtaacttctgcaagttatttcctta 1902659  T
Q  850 ttctatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 897  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1902658 ttcaatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 1902611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 750 - 897
Target Start/End: Complemental strand, 24187856 - 24187709
Alignment:
Q  750 tttcttctccgaacgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttcctta 849  Q
    ||||| ||||| ||||| | |||| || ||| |||| ||||||||  ||||||| |||||||  | ||  | ||||||| ||||||||| ||||||||||    
T  24187856 tttctcctccgtacgcctcgtgttcagccaatttcacagggtcaattttttgtttccaaatctgggaacgcggtagtaacttctgcaagttatttcctta 24187757  T
Q  850 ttctatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 897  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24187756 ttcaatccaaccctaatgctataaaagcaaacctgcaaaatacagaaa 24187709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 451 - 562
Target Start/End: Complemental strand, 18304458 - 18304336
Alignment:
Q  451 gtgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgaca 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||| | ||    
T  18304458 gtgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 18304359  T
Q  540 aagaggttactttgaagtacctc 562  Q
    |||||||||||||||||||||||    
T  18304358 aagaggttactttgaagtacctc 18304336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 4952462 - 4952341
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||           ||||| || ||||||||||||||||||||||||||| | |||    
T  4952462 tgtcatacctcaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaattttggcaa 4952363  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  4952362 agaggttactttgaagtacctc 4952341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 12978455 - 12978576
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||| ||  |||||||||||||||||||||||||| | |||    
T  12978455 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 12978554  T
Q  541 agaggttactttgaagtacctc 562  Q
     |||||||||||||||||||||    
T  12978555 ggaggttactttgaagtacctc 12978576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 13831500 - 13831621
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||| |||||    
T  13831500 tgtcataccctaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 13831599  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  13831600 agaggttactttgaagtacctc 13831621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 13839531 - 13839652
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||           ||||| ||  |||||||||||||||||||||||||| |||||    
T  13839531 tgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 13839630  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  13839631 agaggttactttgaagtacctc 13839652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 18348153 - 18347988
Alignment:
Q  14 atcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaat 113  Q
    ||||||||||| |||||| ||||||||||||||||| || || ||||||| |||||||||||  |||  ||||||| |||||||| ||| | ||||| ||    
T  18348153 atcatattaggctaagagtaatcacacaagtgagatggataccacatattcacttaaaatgtacaataaacatgtactttgtcaactcatcttaacacat 18348054  T
Q  114 ctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgtt 179  Q
     ||| |||||  ||||| |  |||||||||| | ||||||| ||||||||| |||||||| |||||    
T  18348053 gtactatttttcattgtaaactcccaccaaataccaaaagtgaagtaattttaaataatacatgtt 18347988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 10439937 - 10440058
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||           ||||| ||  |||||||||||||||||||||||||||| ||     
T  10439937 tgtcataccccaaattttgaccacttttctctattcttgcccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 10440036  T
Q  541 agaggttactttgaagtacctc 562  Q
    |||||||||||| |||||||||    
T  10440037 agaggttactttaaagtacctc 10440058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 6676239 - 6676396
Alignment:
Q  15 tcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatc 114  Q
    |||||||||| ||||||||||||||||||||||||  | || |||| ||| |||||||||| ||||  ||||||||||||| |||||| ||||||| | |    
T  6676239 tcatattaggctaagagcaatcacacaagtgagattaataccacatttta-cttaaaatgtctaataaacatgtattttgtaaattcaacataacacaac 6676337  T
Q  115 tacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataata 173  Q
    || | ||| | ||||||||||||||| | | ||||| ||| ||| | ||| ||||||||    
T  6676338 tatattttgccattgtcagatcccactacatatcaatagtgaagaagtttgaaataata 6676396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 4941642 - 4941596
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4941642 tgtcataccccaaattttgaccacttttctctattcttacccatttt 4941596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 495 - 562
Target Start/End: Complemental strand, 21663033 - 21662966
Alignment:
Q  495 tttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    ||||||||||||| | | |||||||||| |||||||||||| |||  |||||||||||||||||||||    
T  21663033 tttttaaagccgagagtcttcgtcgttttagacgaaatttcaacagggaggttactttgaagtacctc 21662966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 4110048 - 4110139
Alignment:
Q  89 attttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    |||||||||| ||||||||||| || | || ||| ||| ||||| |||||||||||||| |||||| |||  ||||| ||||||||| ||||    
T  4110048 attttgtcaactcagcataacacatatgcattttcctaatgtcatatcccaccaaagattaaaagtgaaggtatttagaataatagaggttg 4110139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 512 - 562
Target Start/End: Complemental strand, 1955746 - 1955696
Alignment:
Q  512 tttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    |||||||||||||||| |||||||| || |||||||||||||||| |||||    
T  1955746 tttcgtcgtttcagacaaaatttcggcagagaggttactttgaagcacctc 1955696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 30244775 - 30244821
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    ||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  30244775 tgtcatacctcaaattttgaccacttttctctatttttatccatttt 30244821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 842 - 889
Target Start/End: Original strand, 10440355 - 10440402
Alignment:
Q  842 tttccttattctatccaaccctaatgctataaaagcaaacctgcaaaa 889  Q
    ||||||| |||| | ||||||||||||||||||| |||||||||||||    
T  10440355 tttcctttttctcttcaaccctaatgctataaaatcaaacctgcaaaa 10440402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 20181829 - 20181766
Alignment:
Q  17 atattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaat 80  Q
    ||||| || ||||||||| | |||||||||||| ||||| ||||||| ||||||||||| ||||    
T  20181829 atatttggctaagagcaaccgcacaagtgagattgacaccacatattcacttaaaatgtctaat 20181766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 21663088 - 21663042
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||||||||||||| ||||||| ||| || |||||||||||    
T  21663088 tgtcataccccaaattttgatcacttttatctgtttttacccatttt 21663042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 29912995 - 29912885
Alignment:
Q  70 aaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaat 169  Q
    |||||| ||||  ||||||||||||| || ||||||||||| |||| |||||||| |||| ||  | || ||||||  |||||||| |  |||||||| |    
T  29912995 aaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattgccacttgccgccaaagtccaaaagttgatgaatttaaatt 29912896  T
Q  170 aatagatgttg 180  Q
    |||||| ||||    
T  29912895 aatagaggttg 29912885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 30245568 - 30245614
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||| || ||||||||||||||||||||| ||| |||||||    
T  30245568 tgtcatacccaaatttttgaccacttttctctatttttatccatttt 30245614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 498
Target Start/End: Original strand, 30255420 - 30255458
Alignment:
Q  460 cccaaattttgaccacttttctctattcttacccatttt 498  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  30255420 cccaaattttgaccacttttctctatttttatccatttt 30255458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 90; Significance: 5e-43; HSPs: 3)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 691 - 832
Target Start/End: Original strand, 4657 - 4798
Alignment:
Q  691 gtccaatgaagtcaataagtctgaaaatttcagcaagggtccatttctcnnnnnnnncttttcttctccgaacgcc-acatgtttaggcaagttcatagg 789  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| ||        ||||||||||||| ||||| |||||||||||||||||||||||    
T  4657 gtccaatgaagtcaataagtcaaaaaatttcagcaagggtccatttttccttttat-cttttcttctccgtacgcccacatgtttaggcaagttcatagg 4755  T
Q  790 gtcaaagttttgttgccaaatccagcaaatcagtagtaatttc 832  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4756 gtcaaagttttgttgccaaatccagcaaatcagtagtaatttc 4798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 4390 - 4511
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||   |||||||||||||||||||||||           ||||| ||  ||||||| |||||||||||||||||||||||     
T  4390 tgtcataccccaaattttgacattttttctctattcttacccattttattcatatttttaaagtcggtaattttcatcgtttcagacgaaatttcgacag 4489  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  4490 agaggttactttgaagtacctc 4511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 841 - 889
Target Start/End: Original strand, 4794 - 4842
Alignment:
Q  841 atttccttattctatccaaccctaatgctataaaagcaaacctgcaaaa 889  Q
    ||||||||||||||||||||||||||| ||||||   ||||||||||||    
T  4794 atttccttattctatccaaccctaatggtataaattgaaacctgcaaaa 4842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 762 - 889
Target Start/End: Complemental strand, 40582 - 40455
Alignment:
Q  762 acgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaacc 861  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||  | |||||||  |||||||| |||||||||||||||| |||||    
T  40582 acgccacatgtttaggcaagttcatagggtcaagtttttgttgccaaatccagcaacgcggtagtaacctctgcaagttatttccttattctattcaacc 40483  T
Q  862 ctaatgctataaaagcaaacctgcaaaa 889  Q
    |||||| ||||||| |||||||||||||    
T  40482 ctaatggtataaaatcaaacctgcaaaa 40455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 452 - 552
Target Start/End: Complemental strand, 40898 - 40787
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||| ||           |||||||||| |||  |||||| |||||||||||||||| |||||||    
T  40898 tgtcataccccaaattttgaccacttttctctattcttatccattttattcgtatttttaaagtcgagcattttcatcgtttcagacgaaatctcgacaa 40799  T
Q  541 agaggttacttt 552  Q
    ||||||||||||    
T  40798 agaggttacttt 40787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 768 - 896
Target Start/End: Complemental strand, 11240 - 11112
Alignment:
Q  768 catgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatg 867  Q
    |||||| |||||| |||||||||||||| |||||||||||||||||| ||  |||||||||  |||||||| |||||||||||||||| |||||||||||    
T  11240 catgttcaggcaaattcatagggtcaaatttttgttgccaaatccagtaacgcagtagtaacctctgcaagttatttccttattctattcaaccctaatg 11141  T
Q  868 ctataaaagcaaacctgcaaaatacagaa 896  Q
    |||||||||||| |||| |||||||||||    
T  11140 ctataaaagcaagcctgtaaaatacagaa 11112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 73; Significance: 7e-33; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 16004 - 16164
Alignment:
Q  13 catcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaa 112  Q
    |||||||||| | |||||| ||||||||||||||||| ||||| |||| || |||| |||||| ||||   ||||||||||| ||| ||||||| ||| |    
T  16004 catcatattatggtaagagaaatcacacaagtgagattgacaccacatctttacttgaaatgtctaataagcatgtattttgccaactcagcattacaga 16103  T
Q  113 tctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataata 173  Q
    |||||| ||||| ||| ||||||| ||||||||| ||||||| ||||||||||||||||||    
T  16104 tctacatttttccattttcagatcacaccaaagaccaaaagtgaagtaatttaaaataata 16164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 272 - 418
Target Start/End: Original strand, 16252 - 16399
Alignment:
Q  272 catcataatgtttagacttccaggga-agtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttttat 370  Q
    |||| |||||||  |||||||||||  || |||||||| |||| ||||||||| | |||||||| || |||||||||||| | | |||||| ||  | ||    
T  16252 catcgtaatgttgtgacttccagggggagcctaaactgagttggataatcacatttgggtaaaagcacccataaaagtgaaactaacaccacatcctcat 16351  T
Q  371 tcaaaatctaaaggcattaggtatatgggtcatttcacttatattttt 418  Q
     |||||| | |||||||||| ||| || ||||| ||||||||||||||    
T  16352 ccaaaattttaaggcattagttatttgtgtcatctcacttatattttt 16399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 73; Significance: 7e-33; HSPs: 2)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 451 - 562
Target Start/End: Complemental strand, 35422 - 35300
Alignment:
Q  451 gtgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgaca 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||||||||    
T  35422 gtgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgaca 35323  T
Q  540 aagaggttactttgaagtacctc 562  Q
    |||||||||||||||||||||||    
T  35322 aagaggttactttgaagtacctc 35300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 829 - 889
Target Start/End: Complemental strand, 35035 - 34975
Alignment:
Q  829 tttctgcaagatatttccttattctatccaaccctaatgctataaaagcaaacctgcaaaa 889  Q
    |||||||||| ||||||||| |||  | ||||||||||||||||||| |||||||||||||    
T  35035 tttctgcaagttatttcctttttcccttcaaccctaatgctataaaatcaaacctgcaaaa 34975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 68; Significance: 7e-30; HSPs: 2)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 10993 - 11114
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||||| || ||||||||||||||||||||||||||||| ||     
T  10993 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattgttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 11092  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  11093 agaggttactttgaagtacctc 11114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 829 - 889
Target Start/End: Original strand, 11401 - 11461
Alignment:
Q  829 tttctgcaagatatttccttattctatccaaccctaatgctataaaagcaaacctgcaaaa 889  Q
    |||||||||| ||||||||| |||| | ||||||||||||||||||| |||||||||||||    
T  11401 tttctgcaagttatttcctttttctcttcaaccctaatgctataaaatcaaacctgcaaaa 11461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 17778 - 17633
Alignment:
Q  35 tcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttctattgtcaga 134  Q
    ||||||||||||||| ||||| |||| || ||||||||| | ||||    |||||||||| | ||| |||||  || ||||||||||||||||||| |||    
T  17778 tcacacaagtgagattgacaccacatcttcacttaaaatttctaataagtatgtattttggcgattaagcattgcacatctacaattttctattgtgaga 17679  T
Q  135 tcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    | |||||||||| ||||||| |||||||||||||||||||||||||    
T  17678 ttccaccaaagaccaaaagtgaagtaatttaaaataatagatgttg 17633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 397
Target Start/End: Complemental strand, 17538 - 17414
Alignment:
Q  272 catcataatgtttagacttccagggaagtctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttttatt 371  Q
    ||||||||||||  ||||||  ||| || ||||| | |||||  ||||| ||||||| ||| |||||||| |||||| ||||| | | |||||||| | |    
T  17538 catcataatgttatgacttcttggggagcctaaagtaggttggttaatctcagtaggataagatcaaccacaaaagtaagattgataacatattttcact 17439  T
Q  372 caaaatctaaaggcattaggtatatg 397  Q
    |||||||| ||| |||||||||||||    
T  17438 caaaatct-aagacattaggtatatg 17414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 33035 - 33156
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||||| ||  |||||||||||||||||||||||||||| |||    
T  33035 tgtcataccccaaattttgaccacttttctctattcttacccattttatacgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaa 33134  T
Q  541 agaggttactttgaagtacctc 562  Q
    |||||||||||| |||||||||    
T  33135 agaggttactttaaagtacctc 33156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 15813 - 15934
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||           ||||| || ||||||||||||||||||||||||||||| ||     
T  15813 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 15912  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  15913 agaggttactttgaagtacctc 15934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 149 - 28
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||           |||||  || |||||||| ||||||||||||||||| | |||    
T  149 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 50  T
Q  541 agaggttactttgaagtacctc 562  Q
    ||||||||||||||||||||||    
T  49 agaggttactttgaagtacctc 28  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 558
Target Start/End: Original strand, 121228 - 121345
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttaccc-----------atttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||| ||  ||||||||||||||||||||||||||||  |     
T  121228 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggtag 121327  T
Q  541 agaggttactttgaagta 558  Q
    ||||||||||||||||||    
T  121328 agaggttactttgaagta 121345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 55; Significance: 4e-22; HSPs: 3)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 8573 - 8707
Alignment:
Q  13 catcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaa 112  Q
    |||||||||| | |||||||||||||||||||||||| ||||| |||| || |||| |||||| ||||   ||||||||||| ||| ||||||  ||| |    
T  8573 catcatattatgataagagcaatcacacaagtgagattgacaccacatcttcacttgaaatgtctaataagcatgtattttgccaactcagcactacaca 8672  T
Q  113 tctacaattttctattgtcagatcccaccaaagat 147  Q
    |||||| ||||| ||| ||||||| ||||||||||    
T  8673 tctacatttttccattttcagatcacaccaaagat 8707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 418
Target Start/End: Original strand, 70 - 187
Alignment:
Q  301 ctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttttattcaaaatctaaaggcattaggtatatgggt 400  Q
    |||||||  |||| ||||| ||| | |||||||| || |||||||||||| ||| |||||| ||  | || |||||  | |||||||||| |||||| ||    
T  70 ctaaactaagttggataattacatttgggtaaaagcacccataaaagtgaaattaacaccacatcatcatccaaaaatttaaggcattagttatatgtgt 169  T
Q  401 catttcacttatattttt 418  Q
    ||| ||||||||||||||    
T  170 catctcacttatattttt 187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 418
Target Start/End: Original strand, 8885 - 9002
Alignment:
Q  301 ctaaactgggttgtataatcacagtagggtaaaatcaaccataaaagtgagattcacaccatatttttattcaaaatctaaaggcattaggtatatgggt 400  Q
    |||||||  |||| ||||| ||| | |||||||| || |||||||||||| ||| |||||| ||  | || |||||  | |||||||||| |||||| ||    
T  8885 ctaaactaagttggataattacatttgggtaaaagcacccataaaagtgaaattaacaccacatcatcatccaaaaatttaaggcattagttatatgtgt 8984  T
Q  401 catttcacttatattttt 418  Q
    ||| ||||||||||||||    
T  8985 catctcacttatattttt 9002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 139 - 260
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccattt-----------ttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||||||||||||||  |||||||||           ||||||||  ||||||||||  ||||||||||||||||||| |    
T  139 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacga 238  T
Q  541 agaggttactttgaagtacctc 562  Q
    |||| |||||||||||||||||    
T  239 agagtttactttgaagtacctc 260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 452 - 562
Target Start/End: Complemental strand, 994 - 873
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgacaa 540  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||           |||||| |  |||||||||||||||||||||||||||| ||     
T  994 tgtcataccccaaattttgaccagctttctctattcttacccattttattcgtatttttaaagctgggaattttcgtcgtttcagacgaaatttcggcag 895  T
Q  541 agaggttactttgaagtacctc 562  Q
    | ||||||||||||| ||||||    
T  894 aaaggttactttgaaatacctc 873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 756 - 621
Alignment:
Q  11 atcatcatattaggttaagagcaatcacacaagtgagatcgacactacatattaacttaaaatgtgtaatggacatgtattttgtcaattcagcataaca 110  Q
    ||||||||||||   |||||  |||||||||| | |||||||| | |||| |||||||||||| | |||||   |||||||||||||| ||| |||||||    
T  756 atcatcatattattctaagattaatcacacaaattagatcgacgccacatcttaacttaaaatttataatgagtatgtattttgtcaactcaacataaca 657  T
Q  111 aatctacaattttctattgtcagatcccaccaaaga 146  Q
     ||||||||||||  ||||||||| | |||||||||    
T  656 catctacaatttttcattgtcagacctcaccaaaga 621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 452 - 499
Target Start/End: Complemental strand, 7694 - 7647
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccattttt 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7694 tgtcataccccaaattttgaccacttttctctattcttacccattttt 7647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 496 - 562
Target Start/End: Complemental strand, 20492 - 20426
Alignment:
Q  496 ttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    |||||||||||| ||||||||| |||||||||||||||||| || ||||||||||||| ||||||||    
T  20492 ttttaaagccgagaattttcgttgtttcagacgaaatttcggcagagaggttactttggagtacctc 20426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 446 - 481
Target Start/End: Complemental strand, 20553 - 20518
Alignment:
Q  446 gtgaagtgtcataccccaaattttgaccacttttct 481  Q
    |||| |||||||||||||||||||||||||||||||    
T  20553 gtgatgtgtcataccccaaattttgaccacttttct 20518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 23464 - 23510
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23464 tgtcataccccaaattttgaccacttttctctattcttacccatttt 23510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 782 - 889
Target Start/End: Original strand, 23816 - 23922
Alignment:
Q  782 ttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatgctataaaagcaaac 881  Q
    |||||||||||||| ||||||| |||||||||| | |  ||| |   |||||||||  | ||||||| |||| | ||||||||||||||||||| |||||    
T  23816 ttcatagggtcaaatttttgtttccaaatccagtacaa-agttgctgtttctgcaacttgtttcctttttctcttcaaccctaatgctataaaatcaaac 23914  T
Q  882 ctgcaaaa 889  Q
    ||||||||    
T  23915 ctgcaaaa 23922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 23533 - 23586
Alignment:
Q  509 aattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    ||||||| || |||| ||||||||||||  | ||||||||||||||||||||||    
T  23533 aattttcatcatttctgacgaaatttcggtagagaggttactttgaagtacctc 23586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 46; Significance: 1e-16; HSPs: 3)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 762 - 875
Target Start/End: Complemental strand, 65460 - 65347
Alignment:
Q  762 acgccacatgtttaggcaagttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaacc 861  Q
    ||||| ||||||||||| |||||||||||||||  |||||||||||||||||||||  | |||||||  |||||||| |||| |||| |||  |  ||||    
T  65460 acgccgcatgtttaggcgagttcatagggtcaagtttttgttgccaaatccagcaacacggtagtaaactctgcaagttattccctttttccctttaacc 65361  T
Q  862 ctaatgctataaaa 875  Q
    |||||| |||||||    
T  65360 ctaatggtataaaa 65347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 65702 - 65648
Alignment:
Q  508 aaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||    
T  65702 aaattttcgttgtttcggacgaaatttcgacaaagatgttactttgaagtacctc 65648  T

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Target: scaffold0027; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 485
Target Start/End: Complemental strand, 65743 - 65710
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctat 485  Q
    |||||||||| |||||||||||||||||||||||    
T  65743 tgtcataccctaaattttgaccacttttctctat 65710  T

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Target: scaffold0170 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 451 - 562
Target Start/End: Complemental strand, 7256 - 7134
Alignment:
Q  451 gtgtcataccccaaattttgaccacttttctctattcttacccatttt-----------taaagccgaaaattttcgtcgtttcagacgaaatttcgaca 539  Q
    ||||||||||| ||||||||||||||||||||| || |||||||||||           ||||||||| ||||||||| ||||||||||||||||||  |    
T  7256 gtgtcataccctaaattttgaccacttttctctgtttttacccattttatttgtacttttaaagccgagaattttcgttgtttcagacgaaatttcggga 7157  T
Q  540 aagaggttactttgaagtacctc 562  Q
       ||||||||||||||||||||    
T  7156 ggaaggttactttgaagtacctc 7134  T

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Target: scaffold0315 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 10651 - 10600
Alignment:
Q  511 ttttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  10651 ttttcgtcgcttcagacgaaatttcggcaaagaggttactttgaagtacctc 10600  T

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Target: scaffold1487 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 459 - 498
Target Start/End: Complemental strand, 801 - 762
Alignment:
Q  459 ccccaaattttgaccacttttctctattcttacccatttt 498  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  801 ccccaaattttgaccacttttctctattcttacccatttt 762  T

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Target: scaffold1487; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 782 - 889
Target Start/End: Complemental strand, 656 - 550
Alignment:
Q  782 ttcatagggtcaaagttttgttgccaaatccagcaaatcagtagtaatttctgcaagatatttccttattctatccaaccctaatgctataaaagcaaac 881  Q
    |||||||||||||| ||||||| |||||||||| | | | || |   |||||||||  | ||||||| |||| | ||||||||||||||||||| |||||    
T  656 ttcatagggtcaaatttttgtttccaaatccagtaca-ctgttgctgtttctgcaacttgtttcctttttctcttcaaccctaatgctataaaatcaaac 558  T
Q  882 ctgcaaaa 889  Q
    ||||||||    
T  557 ctgcaaaa 550  T

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Target: scaffold0991 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 451 - 498
Target Start/End: Complemental strand, 439 - 392
Alignment:
Q  451 gtgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||    
T  439 gtgtcataccccaaattttgaccacttttctctatttttacacatttt 392  T

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Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 452 - 491
Target Start/End: Original strand, 192528 - 192567
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttac 491  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  192528 tgtcataccccaaattttgaccacttttctctatttttac 192567  T

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Target: scaffold0863 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 437 - 391
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||||||||||||||||||||||| |||| |||| ||||||    
T  437 tgtcataccccaaattttgaccacttttctttatttttacacatttt 391  T

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Target: scaffold0044 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 81851 - 81805
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||| |||||||||||||||||||||||| |||| ||||||    
T  81851 tgtcataccctaaattttgaccacttttctctatttttacacatttt 81805  T

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Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 65603 - 65557
Alignment:
Q  452 tgtcataccccaaattttgaccacttttctctattcttacccatttt 498  Q
    |||||||||||||||||||  |||||||||||||| |||| ||||||    
T  65603 tgtcataccccaaattttgtacacttttctctatttttacacatttt 65557  T

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Target: scaffold0473 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0473
Description:

Target: scaffold0473; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 840 - 889
Target Start/End: Complemental strand, 8860 - 8811
Alignment:
Q  840 tatttccttattctatccaaccctaatgctataaaagcaaacctgcaaaa 889  Q
    |||||||||||||| | ||||||||||||||||||| || ||||||||||    
T  8860 tatttccttattcttttcaaccctaatgctataaaatcagacctgcaaaa 8811  T

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Target: scaffold0061 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 430
Target Start/End: Original strand, 44909 - 44958
Alignment:
Q  381 aaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    |||||||||||||||| | |||| |||||||||| |||||||||||||||    
T  44909 aaggcattaggtatattgttcatctcacttatatatttctcaacatctac 44958  T

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Target: scaffold0021 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 128734 - 128831
Alignment:
Q  83 acatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttg 180  Q
    ||||||||||||||||  || ||||||| ||||||| ||||  ||||| |||| |||| ||| ||||||||| ||| ||||| |||| ||||| ||||    
T  128734 acatgtattttgtcaaaacatcataacacatctacattttttcattgtaagattccacaaaatatcaaaagtgaaggaatttgaaatgatagaggttg 128831  T

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Target: scaffold0017 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 153878 - 153829
Alignment:
Q  381 aaggcattaggtatatgggtcatttcacttatatttttctcaacatctac 430  Q
    |||||||||||||||| | |||| |||||||||| |||||||||||||||    
T  153878 aaggcattaggtatattgttcatctcacttatatatttctcaacatctac 153829  T

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Target: scaffold0169 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 4886 - 4798
Alignment:
Q  83 acatgtattttgtcaattcagcataacaaatctacaattttctattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataa 171  Q
    |||||||||||||||| ||||||||| | ||||| | |||||| |||||  | | ||| ||||| ||||||| ||| ||||||||||||    
T  4886 acatgtattttgtcaactcagcataaaacatctatatttttcttttgtcttacctcacgaaagaacaaaagtaaagaaatttaaaataa 4798  T

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Target: scaffold0290 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 562
Target Start/End: Complemental strand, 15832 - 15765
Alignment:
Q  495 tttttaaagccgaaaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctc 562  Q
    |||||||||||   ||||||||||| ||||||||||||| ||  | | ||||||||||||||||||||    
T  15832 tttttaaagccaggaattttcgtcgcttcagacgaaattacggtagataggttactttgaagtacctc 15765  T

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Target: scaffold0159 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 32905 - 33014
Alignment:
Q  67 ttaaaatgtgtaatggacatgtattttgtcaattcagcataacaaatctacaattttct-attgtcagatcccaccaaagatcaaaagttaagtaattta 165  Q
    ||||||||| ||||  ||||||||||||| |||  |||| |||| | ||||| |||| | ||||||| |||  ||||||||  |||||| ||| ||||||    
T  32905 ttaaaatgtctaataaacatgtattttgttaatgtagcagaacacacctacatttttttcattgtcaaatcgtaccaaagaataaaagtgaagaaattta 33004  T
Q  166 aaataataga 175  Q
    ||||||||||    
T  33005 aaataataga 33014  T

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