View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6211_low_13 (Length: 347)
Name: NF6211_low_13
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6211_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 347
Target Start/End: Original strand, 6472677 - 6473012
Alignment:
| Q |
14 |
atatcaccgggtaaagtttcagttttatttcccaataagcttcttacctttttaataattttttcaatctccgcatattgtgacctagaagaccagagaa |
113 |
Q |
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|||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6472677 |
atatcaccagttaaagtttcagtcttatttcccaataagcttcttacctttttaataattttttcaatctccgcatattgtgacctaaaagaccagagaa |
6472776 |
T |
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| Q |
114 |
tagaaattccaaattatcacttgaaaaccacgaacataaataacaaagattaattgataaaacaattcaagaaccaaaaattaattgaaaagttcagtga |
213 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
6472777 |
tagaaattccaaatcatcacatgaaaaccacgaacataaataacaaagattaattgataaaacaattcaagagccaaaaattaattgaaaagttcattga |
6472876 |
T |
|
| Q |
214 |
aattttgttagtataaacttaaaagtgttgat--caacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggct |
311 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6472877 |
aattttgttagtataaacttaaaagtgttgatcacaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggct |
6472976 |
T |
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| Q |
312 |
acttgtgttagggctcccctccatctttgcactgcc |
347 |
Q |
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| T |
6472977 |
acttgtgttagggctcccctccatctttgcactgcc |
6473012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 13608756 - 13608639
Alignment:
| Q |
227 |
taaacttaaaagtgttgatcaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttagggct |
326 |
Q |
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| T |
13608756 |
taaacttaaaagtgttgatcagcttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggct |
13608657 |
T |
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| Q |
327 |
cccctccatctttgcact |
344 |
Q |
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| T |
13608656 |
cccctccatctttgcact |
13608639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 13609038 - 13608867
Alignment:
| Q |
23 |
ggtaaagtttcagttttatttcccaataagcttcttacctttttaataattttttcaatctccgcatattgtgacctagaagaccagagaatagaaattc |
122 |
Q |
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||||||||| |||||| ||||||||||||| | ||| |||||||||||||||| ||||||| ||||||| || ||||||||||||||| |||||||||| |
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| T |
13609038 |
ggtaaagttgaagttttgtttcccaataagcatgttaactttttaataatttttccaatctctgcatattctggcctagaagaccagaggatagaaattc |
13608939 |
T |
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| Q |
123 |
caaattatcacttgaaaaccacgaacataaataacaaagattaattgataaaacaattcaagaaccaaaaat |
194 |
Q |
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||||| ||||| ||| |||||| |||| ||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
13608938 |
caaatcatcacatgacaaccacaaacaaaaacaacaaagattaattgataaaacaatccaagaaccaaaaat |
13608867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 225 - 344
Target Start/End: Complemental strand, 31244738 - 31244618
Alignment:
| Q |
225 |
tataaacttaaaa-gtgttgatcaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttagg |
323 |
Q |
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||||||||||||| || ||||| ||||| |||||||||||||| |||||||||| |||| ||| ||||||||||||||| | ||||||||||| |||| |
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| T |
31244738 |
tataaacttaaaaagttatgatcgacttgttgcaaacatagaaaagactacttactgatcccttacatcccaaccagagagttcggctacttgtgctagg |
31244639 |
T |
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| Q |
324 |
gctcccctccatctttgcact |
344 |
Q |
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||||| ||||||||||||||| |
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| T |
31244638 |
gctcctctccatctttgcact |
31244618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 196
Target Start/End: Complemental strand, 31244964 - 31244823
Alignment:
| Q |
46 |
caataagcttcttacctttttaataattttttcaatctccgcatattgtgacctagaagaccagagaatagaaattccaaattatcacttgaaaaccacg |
145 |
Q |
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|||||||| | |||||| ||||||||||||| ||||||| |||||||||| |||| |||||||||| |||||||| |||||| ||||| | |||| | |
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| T |
31244964 |
caataagcatgttacctctttaataatttttccaatctctgcatattgtggcctaaaagaccagaggatagaaataccaaatcatcacacaacaacccc- |
31244866 |
T |
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| Q |
146 |
aacataaataacaaagattaattgataaaacaattcaagaaccaaaaatta |
196 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31244865 |
--------aaacaaaaattaattgataaaacaattcaagaaccaaaaatta |
31244823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 31150836 - 31150889
Alignment:
| Q |
290 |
atcccaaccagagagattggctacttgtgttagggctcccctccatctttgcac |
343 |
Q |
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| T |
31150836 |
atcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcac |
31150889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 31496595 - 31496522
Alignment:
| Q |
270 |
actacttacttatcctttatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcac |
343 |
Q |
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|||| ||||||||| | || ||||||||||||||||| || |||||| |||| ||| |||||||||||||||| |
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| T |
31496595 |
actatttacttatcatgtagatcccaaccagagagatcagcgacttgtattagagcttccctccatctttgcac |
31496522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 31159732 - 31159784
Alignment:
| Q |
288 |
atatcccaaccagagagattggctacttgtgttagggctcccctccatctttg |
340 |
Q |
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||||||||||||||||||||||| ||||||||||| | ||||||||||||| |
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| T |
31159732 |
atatcccaaccagagagattggcgacttgtgttagacttgccctccatctttg |
31159784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 342
Target Start/End: Complemental strand, 14724251 - 14724137
Alignment:
| Q |
226 |
ataaacttaaaagtgttgatcaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttagggc |
325 |
Q |
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||||||||||||| |||||| | |||| || |||||||||||||| ||||||| ||||||||||| ||| || || ||||||||||||||| || ||| |
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| T |
14724251 |
ataaacttaaaagcgttgattatcttgttgctaacatagaaaatacaacttactgatcctttatattccagcc--agggattggctacttgtgctaaggc |
14724154 |
T |
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| Q |
326 |
tcccctccatctttgca |
342 |
Q |
| |
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|||||||||| |||||| |
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| T |
14724153 |
tcccctccatatttgca |
14724137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 342
Target Start/End: Original strand, 17599599 - 17599713
Alignment:
| Q |
226 |
ataaacttaaaagtgttgatcaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttagggc |
325 |
Q |
| |
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|||||||||||||||||||| | |||| || |||||||||||||| ||||||| ||||||||||| ||| || || ||||||||||||| |||| ||| |
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| T |
17599599 |
ataaacttaaaagtgttgattatcttgttgctaacatagaaaatacaacttactgatcctttatattccagcc--agggattggctacttgagttaaggc |
17599696 |
T |
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| Q |
326 |
tcccctccatctttgca |
342 |
Q |
| |
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||||||||| |||||| |
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| T |
17599697 |
acccctccatatttgca |
17599713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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