View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6211_low_14 (Length: 341)
Name: NF6211_low_14
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6211_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 2228921 - 2228605
Alignment:
| Q |
13 |
aatatagaaaatttgctctaattgataatcaattaaacatggtcttgaatatcatagctaacttaattgtgagcttaaaacattgcaggaagcaggacct |
112 |
Q |
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| T |
2228921 |
aatatagaaaacttgctctaattgataatcaattaaacatggtcttgaatgccatagctaacttaattatgagcttaaaacattgcaggaagcaggacct |
2228822 |
T |
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| Q |
113 |
agtggagcagctggaggtggaatatttggtgcatcaactgatgaaaaaagagtttatacaaacattgcaaattcagatgccaaaaatttcaagttgttac |
212 |
Q |
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| T |
2228821 |
agtggagcagctggaggtggaatatttggtgcatcaacagatgaaaaaagagtttatacaaacattgcaaattcagatgccaaaaatttcaagctgttac |
2228722 |
T |
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| Q |
213 |
caacaaatatgaatacaacatttggaggatgggtgggaatggatgctatgaatggagaaataatatggactacagctaaccctagcaataatagtgctaa |
312 |
Q |
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| T |
2228721 |
caacaaatatgaatacaacatctggaggatgggtgggaatggatgctatgaatggagaaataatatggactacagctaaccctagcaataatagtgctaa |
2228622 |
T |
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| Q |
313 |
tggccctgttagtgttg |
329 |
Q |
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| T |
2228621 |
tggccctgttagtgttg |
2228605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 70 - 327
Target Start/End: Complemental strand, 2236543 - 2236283
Alignment:
| Q |
70 |
ctaacttaattgtgagcttaaaacattgcaggaagcaggacctagtggagcagctggaggtggaatatttggtgcatcaactgatgaaaaaagagtttat |
169 |
Q |
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| T |
2236543 |
ctaatttaattataagctcaaaatattacaggaagcagggcctggtggactagccggaggtggaacatttggtgcagcaactgatgaaaaacgaatatat |
2236444 |
T |
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| Q |
170 |
acaaacattgcaaattcagatgccaaaaatttcaagttgttaccaacaaatatgaatacaacatttggaggatgggtgggaatggatgctatgaatggag |
269 |
Q |
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| T |
2236443 |
accaatattgcaaattcagatgccaaaattttcaaacttttaccatcaaatatgaatacaacatcaggaggatgggtggcaatggatgctagcaatggaa |
2236344 |
T |
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| Q |
270 |
aaataatatggactacagctaaccctagcaataatag---tgctaatggccctgttagtgt |
327 |
Q |
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| T |
2236343 |
caattctatggtctacagctaaccctagcattaatagtactgctagtggccctgttagtgt |
2236283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 2262040 - 2262084
Alignment:
| Q |
159 |
aaagagtttatacaaacattgcaaattcagatgccaaaaatttca |
203 |
Q |
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| T |
2262040 |
aaagagtttatacaaacattgctaattcaaatgcgaaaaatttca |
2262084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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