View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6211_low_15 (Length: 337)
Name: NF6211_low_15
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6211_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 43232145 - 43232410
Alignment:
| Q |
18 |
tgtaaatgccttcatgatcccttattacatacttatttaggttgacttgatttttaatccacttcaactcgatttgtcttctc------------tctta |
105 |
Q |
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| T |
43232145 |
tgtaaatgccttcatgatcccttattacatacttatttacgttgacttgatttttaatccacttcaactcgttttgtcttctctaaaaccctctctctta |
43232244 |
T |
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| Q |
106 |
tctaaccctctccatctttattttccttctttactacaacttcttcagaggtaaggtttgtttcatttattttcacccttgttttcttgtatacataccg |
205 |
Q |
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| T |
43232245 |
tctaaccccctccatctttattttccttctttactacaacttcttcagaggtaaggtttgtttcatttattttcacccttgttttgttgtatacataccc |
43232344 |
T |
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| Q |
206 |
tttatttataagtttgtgttatgtttttatttctcctttttccttcttaaagctgcagtcttataa |
271 |
Q |
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| T |
43232345 |
tttatttataagtttgtgttatgtttttatttctcttttttccttcttaaagctgcagtcttataa |
43232410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 293 - 336
Target Start/End: Original strand, 43233060 - 43233103
Alignment:
| Q |
293 |
agtttttcatattcttgagcttgaatctcattgttaaattactc |
336 |
Q |
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| T |
43233060 |
agtttttcatattcttgagcttgaatctcattgttaaattactc |
43233103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 267
Target Start/End: Original strand, 29362170 - 29362302
Alignment:
| Q |
131 |
cttctttactacaacttcttcagaggtaaggtttgtttcatttattttcacccttgttttcttgtatacataccgtttatttataagtttgtgttatgtt |
230 |
Q |
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| T |
29362170 |
cttctttacttcaacattttcttaggtgagttttgtttcatttaacttcatccttgtttt----tatgcataccctttatttataactttgtgttttctt |
29362265 |
T |
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| Q |
231 |
tttatttctcctttttccttcttaaagctgcagtctt |
267 |
Q |
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| T |
29362266 |
tattcttctcttttttccttctgaaagttgcaatctt |
29362302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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