View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6211_low_19 (Length: 270)
Name: NF6211_low_19
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6211_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 3215521 - 3215773
Alignment:
| Q |
1 |
tgatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgtaattcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215521 |
tgatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgtaattcaaa |
3215620 |
T |
|
| Q |
101 |
ccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggcaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215621 |
ccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggcaaata |
3215720 |
T |
|
| Q |
201 |
aatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaact |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215721 |
aatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaact |
3215773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 2 - 252
Target Start/End: Original strand, 3207586 - 3207836
Alignment:
| Q |
2 |
gatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgtaattcaaac |
101 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||||| |
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| T |
3207586 |
gatggataattaagctgtgcttgtggtatgctctttacatcagagcatttcactttttgttgcaaaataactccaacttgtctatcagtataattcaaac |
3207685 |
T |
|
| Q |
102 |
cacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggcaaataa |
201 |
Q |
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| T |
3207686 |
cacacaaataaggaacataatcatttgtttcaatatcataaacaagtcccggatcatttgcttttgaagggttgacatgtccagcaccagtggcaaatac |
3207785 |
T |
|
| Q |
202 |
atcagctggtttaagtctttggtccaaaatagcttttccttgaagattaac |
252 |
Q |
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|||||||||| || ||||||||||||||||| || |||||||||||||| |
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| T |
3207786 |
atcagctggtagaattctttggtccaaaataggcttaccttgaagattaac |
3207836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 3201611 - 3201843
Alignment:
| Q |
1 |
tgatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgtaattcaaa |
100 |
Q |
| |
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|||||| |||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||| ||||||| ||||||||| |
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| T |
3201611 |
tgatgggtaattaagttgtgcttgtggtatgctctttacatcagagcatttcactttttgttgcaatataattccaacttgtatatcagtataattcaaa |
3201710 |
T |
|
| Q |
101 |
ccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggcaaata |
200 |
Q |
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| T |
3201711 |
ccacacaaataaggaacataatcatttgtttcaatatcataaacaagtcccggatcgtttgcttttgaagggttaacatgtccagcaccagtggcaaata |
3201810 |
T |
|
| Q |
201 |
aatcagctggtttaagtctttggtccaaaatag |
233 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| |
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| T |
3201811 |
catcagctggtagaagcctttggtccaaaatag |
3201843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 3219101 - 3219277
Alignment:
| Q |
75 |
caacatgtctatcagtgtaattcaaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggtt |
174 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |||| |
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| T |
3219101 |
caacttgtatatcagtataattcaaaccacccaagtaaggaacaatgtcatttggttcaatgtcataaacaagtcctggatcgtttgctttcaaatggtt |
3219200 |
T |
|
| Q |
175 |
gacatgtccagcaccagtggcaaataaatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaa |
251 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
3219201 |
gacatatccagcaccagtggcaaataaatcagctggtttaagcctttggtctaaaatagcttttccttgaagattaa |
3219277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 3220537 - 3220647
Alignment:
| Q |
97 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggca |
196 |
Q |
| |
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||||||||||| |||||||||||||| | ||||||||||||||||||||| || ||||| || ||||| ||| || |||||||| |||||||| ||| |
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| T |
3220537 |
caaaccacacagataaggaacataatcttctggttcaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagtagca |
3220636 |
T |
|
| Q |
197 |
aataaatcagc |
207 |
Q |
| |
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|| | |||||| |
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| T |
3220637 |
aaaatatcagc |
3220647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 233
Target Start/End: Complemental strand, 3179271 - 3179135
Alignment:
| Q |
97 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggca |
196 |
Q |
| |
|
||||||||||| |||||||| ||||| | ||||| ||||||||||||||| || ||||| || ||||| ||| || |||||||| |||||||| ||| |
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| T |
3179271 |
caaaccacacagataaggaacgtaatcttctggttgaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagtagca |
3179172 |
T |
|
| Q |
197 |
aataaatcagctggtttaagtctttggtccaaaatag |
233 |
Q |
| |
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|| | |||||| ||| ||||||||| ||||| |||| |
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| T |
3179171 |
aaaacatcagcaggtgaaagtctttgatccaatatag |
3179135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 233
Target Start/End: Original strand, 3239569 - 3239705
Alignment:
| Q |
97 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggca |
196 |
Q |
| |
|
||||||||||| |||||||| ||||| | ||||| ||||||||||||||| || ||||| || ||||| ||| || |||||||| |||||||| ||| |
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| T |
3239569 |
caaaccacacagataaggaacgtaatcttctggttgaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagtagca |
3239668 |
T |
|
| Q |
197 |
aataaatcagctggtttaagtctttggtccaaaatag |
233 |
Q |
| |
|
|| | |||||| ||| ||||||||| ||||| |||| |
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|
| T |
3239669 |
aaaacatcagcaggtgaaagtctttgatccaatatag |
3239705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 3230770 - 3230865
Alignment:
| Q |
97 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagt |
192 |
Q |
| |
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||||||||| | |||||||||||||| | ||||||||||||||||||||| || ||||| || ||||| |||| || |||||||| |||||||| |
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| T |
3230770 |
caaaccacaaagataaggaacataatcttctggttcaatatcataaacaagaccaggatcattagctttaaaaggattaacatgtcctgcaccagt |
3230865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 3225522 - 3225617
Alignment:
| Q |
97 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagt |
192 |
Q |
| |
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||||||||| | |||||||||||||| | ||||||||||||||||||||| || ||||| || ||||| ||| || |||||||| |||||||| |
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|
| T |
3225522 |
caaaccacatagataaggaacataatcttctggttcaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagt |
3225617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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