View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6211_low_2 (Length: 756)

Name: NF6211_low_2
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6211_low_2
NF6211_low_2
[»] chr4 (9 HSPs)
chr4 (18-744)||(46873531-46874257)
chr4 (468-744)||(46891771-46892058)
chr4 (116-190)||(46891043-46891117)
chr4 (393-459)||(46891392-46891458)
chr4 (233-372)||(46891255-46891396)
chr4 (394-459)||(46900046-46900111)
chr4 (273-332)||(18968310-18968369)
chr4 (303-332)||(35522102-35522131)
chr4 (665-741)||(46865354-46865431)
[»] chr1 (3 HSPs)
chr1 (112-217)||(48232114-48232219)
chr1 (112-217)||(48237154-48237259)
chr1 (287-332)||(26238437-26238482)
[»] chr3 (2 HSPs)
chr3 (672-741)||(27300646-27300716)
chr3 (661-741)||(27310556-27310638)


Alignment Details
Target: chr4 (Bit Score: 682; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 18 - 744
Target Start/End: Original strand, 46873531 - 46874257
Alignment:
Q  18 gtttataggcagagcaagttctgaatgagcaattgttatattgtttatacaacaaatgccgcttcagttttgaaataatgggccacattcctgtatgatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873531 gtttataggcagagcaagttctgaatgagcaattgttatattgtttatacaacaaatgccgcttcagttttgaaataatgggccacattcctgtatgatt 46873630  T
Q  118 aatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgactattatac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46873631 aatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggtggactttgtgctagttggcatatgctactgtgactattatac 46873730  T
Q  218 gatgtggcatggcggacattgtgttgttaattgcggttcgcggaaaaatatgctagttcaaattccgctctgcaatagtgctttagccgctatttcacaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873731 gatgtggcatggcggacattgtgttgttaattgcggttcgcggaaaaatatgctagttcaaattccgctctgcaatagtgctttagccgctatttcacaa 46873830  T
Q  318 tattttgcactaaatgacttttcgcggggcattagcgagttgttcaaatcccgctctgcaatagctccaatgcagccgctatttaacaacacttgcataa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  46873831 tattttgcactaaatgacttttcgcggggcattagcgagttgttcaaatcccgctctgcaatagctccaatgcagccgctatttaacaacacttgcacaa 46873930  T
Q  418 cacttgaatgaaattatgaattttcccgtcaaccccattgtccgagtcatcaatcattttgaggtgcattgctcatttgcaaagttttaaattgcgacca 517  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46873931 cacttgaatgaaattatgaattttcccgtcaaccccattatccgagtcatcaataattttgaggtgcattgctcatttgcaaagttttaaattgcgacca 46874030  T
Q  518 tgccgcgatccttaataccgcggtcaaataaggttaatgcagctgcatttgtgatgatgaagacataagacatctgtacgtcacagccacagttgtgatc 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  46874031 tgccgcgatccttaataccgcggtcaaataaggttaatgcagctgcatttgtgatgatgaagacataagacatctgtacgtctcagccacagttgtggtc 46874130  T
Q  618 ctagaccttatatttnnnnnnntcttgttcgcttgtgtgcgagtgtatgataacttatatttgcatattgtgagcaaaattacaagatgattataacaat 717  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46874131 ctagaccttatatttaaaaaaatcttgttcgcttgtgtgcgagtgtatgataacttatatttgcatattgtgagcaaaattacaagatgattataacaat 46874230  T
Q  718 tgcaactttttggtttccatgtatatt 744  Q
    |||||||||||||||||||||||||||    
T  46874231 tgcaactttttggtttccatgtatatt 46874257  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 468 - 744
Target Start/End: Original strand, 46891771 - 46892058
Alignment:
Q  468 caatcattttgaggtgcattgctcatttgcaaagttttaaattgcgaccatgccgcgatccttaataccgcggtcaaataaggttaatgcagctgcattt 567  Q
    |||| |||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||| |||||||||||||||||||    
T  46891771 caataattttgaggtacattgttcatttgcaaagttttaaattgtgaccatgccgcgatccttaatattggggtcaaatatggttaatgcagctgcattt 46891870  T
Q  568 gtg-----atg-atgaagacata---agacatctgtacgtcacagccacagttgtgatcctagaccttatatttnnnnnnntcttgttcgcttgtgtg-c 657  Q
    |||     ||| ||||  || ||      |||||||||||| ||||||||||  || ||  |||||||||||||       |||||||||||||||||      
T  46891871 gtgtgtgaatgtatgataacttatatttgcatctgtacgtctcagccacagtcatggtcgcagaccttatatttaaaaaaatcttgttcgcttgtgtgta 46891970  T
Q  658 gagtgtatgataacttatatttgcatattgtgagc-aaaattacaagatgattataacaattgcaactttttggtttccatgtatatt 744  Q
     | | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |||| |||||||||||||||||||    
T  46891971 aaatatatgataacttatatttgcatattgtgagcaaaaagtacaagatgattataacaaatgaaactgtttggtttccatgtatatt 46892058  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 46891043 - 46891117
Alignment:
Q  116 ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagt 190  Q
    |||||||||||||||||||||||||||||||||||| |||||| |  || |||||||||||||||||||||||||    
T  46891043 ttaatgatcacattatctccttgttatcaaatttctgccataaatgggctgtggcatggcggactttgtgctagt 46891117  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 393 - 459
Target Start/End: Original strand, 46891392 - 46891458
Alignment:
Q  393 ccgctatttaacaacacttgcataacacttgaatgaaattatgaattttcccgtcaaccccattgtc 459  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||| |||||||    
T  46891392 ccgctatttaacaacacttacataatacttgaatgaaattctgaatttttccgtcaaccacattgtc 46891458  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 233 - 372
Target Start/End: Original strand, 46891255 - 46891396
Alignment:
Q  233 acattgtgttgttaattgcggttcgcggaaaaatatgct-agttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaa 331  Q
    ||||||||||||||||||| ||| |||||| ||| || | ||||| || |  | |||| ||||||||| |||||||||||||||||||||||| ||||||    
T  46891255 acattgtgttgttaattgcagtttgcggaataatgtggttagttccaaatatgttctgtaatagtgctatagccgctatttcacaatattttgtactaaa 46891354  T
Q  332 tgacttttcg-cggggcattagcgagttgttcaaatcccgct 372  Q
    | |  ||| |  |||||| ||| || ||||||||||||||||    
T  46891355 taaagtttggtgggggcaatagtgatttgttcaaatcccgct 46891396  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 459
Target Start/End: Original strand, 46900046 - 46900111
Alignment:
Q  394 cgctatttaacaacacttgcataacacttgaatgaaattatgaattttcccgtcaaccccattgtc 459  Q
    |||||||| ||| ||||| ||||| |||||||||||||| ||  ||||||| ||||||||||||||    
T  46900046 cgctatttgacatcacttacataatacttgaatgaaattctgctttttcccatcaaccccattgtc 46900111  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 18968369 - 18968310
Alignment:
Q  273 gttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaat 332  Q
    ||||||||| |||| |||||||||| | |||||||||||| |||| |||||| |||||||    
T  18968369 gttcaaattacgctatgcaatagtgttatagccgctatttgacaacattttgtactaaat 18968310  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 332
Target Start/End: Complemental strand, 35522131 - 35522102
Alignment:
Q  303 gccgctatttcacaatattttgcactaaat 332  Q
    ||||||||||||||||||||||||||||||    
T  35522131 gccgctatttcacaatattttgcactaaat 35522102  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 741
Target Start/End: Original strand, 46865354 - 46865431
Alignment:
Q  665 tgataacttatatttgcatattgtgagcaaa-attacaagatgattataacaattgcaactttttggtttccatgtat 741  Q
    |||| |||| ||||| |||||||||| |||| | | |||||||||| ||||||||  |||| ||||||||||||||||    
T  46865354 tgattacttgtatttacatattgtgaacaaagaattcaagatgattgtaacaatttaaactgtttggtttccatgtat 46865431  T

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Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 48232219 - 48232114
Alignment:
Q  112 atgattaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgacta 211  Q
    |||||||| ||||||||||||||||||||||||||||||| | | || |   | ||||||||||||||||||||||||  ||||||  ||||  ||||||    
T  48232219 atgattaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtctaccatgacta 48232120  T
Q  212 ttatac 217  Q
    ||||||    
T  48232119 ttatac 48232114  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 48237259 - 48237154
Alignment:
Q  112 atgattaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgacta 211  Q
    |||||||| ||||||||||||||||||||||||||||||| | | || |   | ||||||||||||||||||||||||  ||||||  ||||  ||||||    
T  48237259 atgattaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtctaccatgacta 48237160  T
Q  212 ttatac 217  Q
    ||||||    
T  48237159 ttatac 48237154  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 26238437 - 26238482
Alignment:
Q  287 ctgcaatagtgctttagccgctatttcacaatattttgcactaaat 332  Q
    ||||||||||||| ||||||||||||  |||||||||| |||||||    
T  26238437 ctgcaatagtgctatagccgctatttggcaatattttgtactaaat 26238482  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 672 - 741
Target Start/End: Original strand, 27300646 - 27300716
Alignment:
Q  672 ttatatttgcatattgtgagcaaaatt-acaagatgattataacaattgcaactttttggtttccatgtat 741  Q
    ||||||||| ||||| ||  ||||||| ||||||||||||||||||||| |||| |||||||| |||||||    
T  27300646 ttatatttgaatattttgtacaaaatttacaagatgattataacaattgaaactatttggttttcatgtat 27300716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 661 - 741
Target Start/End: Original strand, 27310556 - 27310638
Alignment:
Q  661 tgtatgataacttatatttgcatattgtgagcaaaa-ttacaagatgattat-aacaattgcaactttttggtttccatgtat 741  Q
    |||||||||| ||||||||| ||||||||  ||||| ||||||||| ||||| |||||||| |||| |||||||| |||||||    
T  27310556 tgtatgataagttatatttgaatattgtggacaaaaattacaagataattataaacaattgaaactatttggttttcatgtat 27310638  T

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