View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6211_low_23 (Length: 236)
Name: NF6211_low_23
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6211_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 35549407 - 35549617
Alignment:
| Q |
8 |
tcgaagaatatcaagagtagtgttgagattttttgctataactaaccataactctttaggaagatttatccattgcaccatcttgttatcatacatcaca |
107 |
Q |
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| T |
35549407 |
tcgaacaacatcaagagtagtgttgagattttttgctataactaaccataactctttaggaagatttatccattgcaccatcttgttatcatacatcaca |
35549506 |
T |
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| Q |
108 |
ctacattccatactttttgttaagtctccagctccacaattcgtcactgtcaaggttgtcaaactagagaatttaagtaggtgtttggttgcacggtgga |
207 |
Q |
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| T |
35549507 |
ctacattccatactttttgttaagtctccagctccacaattcgtcactgtcaaggttgtcaaactagagaatttaagtaggtgtttggttgcacggtgga |
35549606 |
T |
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| Q |
208 |
atttaataaac |
218 |
Q |
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| T |
35549607 |
attgaataaac |
35549617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 37037439 - 37037403
Alignment:
| Q |
182 |
aagtaggtgtttggttgcacggtggaatttaataaac |
218 |
Q |
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| T |
37037439 |
aagtaggtgtttggttgcatggtggaatttaataaac |
37037403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 20672693 - 20672728
Alignment:
| Q |
183 |
agtaggtgtttggttgcacggtggaatttaataaac |
218 |
Q |
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| T |
20672693 |
agtaggtgtttggttgcacagtggaatttaataaac |
20672728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 8385028 - 8384994
Alignment:
| Q |
184 |
gtaggtgtttggttgcacggtggaatttaataaac |
218 |
Q |
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| T |
8385028 |
gtaggtgtttggttgcacggtagaatttaataaac |
8384994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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