View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6211_low_24 (Length: 235)
Name: NF6211_low_24
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6211_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 3932819 - 3932614
Alignment:
| Q |
12 |
ccaagaatatctaggttctgcaacagatcgcttcacacataccctatcaccaatctgtaagacaaatacaaatcatgtaacaaaaataggacaaaaatat |
111 |
Q |
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| T |
3932819 |
ccaagcatatctaggttctgcgacagatcgcttcacacataccctatcaccaatctgtaagacaaatacaaatcatgtaacaaaaataggacaaaaatat |
3932720 |
T |
|
| Q |
112 |
taagtcagagaattaaaataatctacattcctcttaccctaaaaggaggaacatgctcaatctcctctggttcacaatgccatggattttgaacatagct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3932719 |
taagtcagagaattaaaataatctacattcctcttaccctaaaaggaggaacatgctcaatctcctctggttcacaatgccatggattttgaacatagct |
3932620 |
T |
|
| Q |
212 |
caactc |
217 |
Q |
| |
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|||||| |
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| T |
3932619 |
caactc |
3932614 |
T |
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