View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6211_low_28 (Length: 216)
Name: NF6211_low_28
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6211_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 27777972 - 27777773
Alignment:
| Q |
1 |
tcatcaacgtatccaagtaatacagtgatcttggaatcaatatgtttgacaaaaagagagtaatcggattttgatttccaataaccaagcttcaaaagga |
100 |
Q |
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| T |
27777972 |
tcatcaatgtatccaagtaatacagtgatcttggaatcaatatgtttgacaaaaagagagtaatcggattttgatttccaataaccaagcttcaaaagtg |
27777873 |
T |
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| Q |
101 |
cataagttagtttgaaattccattggtgactcgcttgcttgagttcataaagatacttgactaatttgcaaacttggttgggttgagaagattaaaaacc |
200 |
Q |
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| T |
27777872 |
cataagttagtttgaaattccattggtgactcgcttgcttgagttcataaagatacttgactaatttgcaaacttggttgggttgagaagattaaaaacc |
27777773 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 8562431 - 8562493
Alignment:
| Q |
128 |
gactcgcttgcttgagttcataaagatacttgactaatttgcaaacttggttgggttgagaag |
190 |
Q |
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| T |
8562431 |
gactggcttgcttaagtccataaagagacttgagtaatttgcaaactttgttaggttgagaag |
8562493 |
T |
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