View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6211_low_7 (Length: 634)
Name: NF6211_low_7
Description: NF6211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6211_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 10 - 615
Target Start/End: Complemental strand, 44398037 - 44397445
Alignment:
| Q |
10 |
gacatcatcatccaaaatagcatttaccacatccaagtgatcttgaactgcagcagcatataggggactggtgtttgtcgagtcacacaacttacagacc |
109 |
Q |
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| T |
44398037 |
gacatcaacatccaaaatagcatttaccacatccaagtgatcttgaacagcagcagcatataggggactggtgtttgtcgagtcgcacaacttacagacc |
44397938 |
T |
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| Q |
110 |
gcaggccaggcactcaaaatctccctcacaatatctggaaaaaagttagacgttaacatcatgattgaaaaacttaattatatattcattacaatcaaga |
209 |
Q |
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| T |
44397937 |
gcaggccaggcactcaaaatctccctcacaatatctggaaaaaagttagacgttaacatcatgattgaaaaacttaattatatattcattacaatcaaga |
44397838 |
T |
|
| Q |
210 |
ttgtaacatttgctaccagtgtttatccattacaattatgcaattctatcacaggaagtagatcttcacagaaatttaacaaaataataattcaattaaa |
309 |
Q |
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| T |
44397837 |
ttgtaacatttgctaccagtgtttatccattacaattatgcaattctatcacaggaagtagatcttcacagaaatttaacaaaataataattcaattaaa |
44397738 |
T |
|
| Q |
310 |
gtcttttgtattccaaattcaaaatatgtaaagcaaaaccatgcaagagaacaaaagtttcaatagaattttacaaacttcaataattaaatataaaata |
409 |
Q |
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| T |
44397737 |
gtcttttgtattccaaattcaaaatatgtgaagcaaaaccatgcaagagaacaaaagtttcaatagaattttacaaacttcaataattaaatataaaata |
44397638 |
T |
|
| Q |
410 |
aacttgatgttttttgaaatttcgaagttaaagtaaaccaagtaagtgattgaactcaaatgattaatgaactttagagttaaggacgaatagaaaccct |
509 |
Q |
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| T |
44397637 |
aacttgatgttttttgaaatttggaagttaaagt-aaccaagtaagtgattgaactaaaatgattaatgaactttagagttaaggacgaatagaaaccct |
44397539 |
T |
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| Q |
510 |
gaaacaatctttatccaaaccttacttatctcctgacttaactccggattatgggtaatagaatcaacacagttcatccaataatagaaatatccaaaca |
609 |
Q |
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| T |
44397538 |
gaaacaatcttaatccaaaccttacttat------------ctccggattatgggtaatagaatcaacaaagttcatccaataatagaaatatccaaaca |
44397451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 11359004 - 11358861
Alignment:
| Q |
10 |
gacatcatcatccaaaatagcatttaccacatccaagtgatcttgaactgcagcagcatataggggactggtgtttgtcgagtcacacaacttacagacc |
109 |
Q |
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||||||| |||||||||||||||| ||||||||||| || |||||||| ||||| ||| || ||||| ||||| | ||||| || |||||||| || |
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| T |
11359004 |
gacatcaacatccaaaatagcattcaccacatccaaatggtcttgaacagcagctaaataaagtggactagtgttcgaagagtcgcataacttacaagcc |
11358905 |
T |
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| Q |
110 |
gcaggccaggcactcaaaatctccctcacaatatctggaaaaaa |
153 |
Q |
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| T |
11358904 |
tcaggccaagtactcaaaatctccctcacaatttctggaaaaaa |
11358861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 485
Target Start/End: Original strand, 37606951 - 37606984
Alignment:
| Q |
452 |
taagtgattgaactcaaatgattaatgaacttta |
485 |
Q |
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| T |
37606951 |
taagtgattgaactcaaatgattaatgaatttta |
37606984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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