View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6212_high_2 (Length: 265)

Name: NF6212_high_2
Description: NF6212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6212_high_2
NF6212_high_2
[»] chr8 (5 HSPs)
chr8 (52-255)||(29158153-29158353)
chr8 (1-60)||(29158670-29158729)
chr8 (65-117)||(12123239-12123291)
chr8 (48-145)||(35464678-35464775)
chr8 (101-146)||(35464868-35464913)
[»] chr7 (3 HSPs)
chr7 (65-144)||(47819401-47819483)
chr7 (65-146)||(2886247-2886328)
chr7 (65-146)||(19568397-19568477)
[»] chr6 (1 HSPs)
chr6 (89-145)||(11626924-11626980)
[»] chr5 (2 HSPs)
chr5 (42-144)||(4854268-4854368)
chr5 (67-144)||(27719563-27719640)
[»] scaffold0050 (1 HSPs)
scaffold0050 (65-106)||(58404-58445)
[»] chr3 (2 HSPs)
chr3 (66-146)||(2055431-2055509)
chr3 (65-122)||(54254076-54254133)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 52 - 255
Target Start/End: Complemental strand, 29158353 - 29158153
Alignment:
Q  52 tatatagttttatgactacttattatatttacataggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttattcagaaaa 151  Q
    |||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29158353 tatatagtttaatgactacttattatatttaca--ggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttattcagaaaa 29158256  T
Q  152 aagtttgactgtagtnnnnnnnnncactactgtagtggttgcttcttgacaataatggttaatttcttcatctgaaaacaacaaaattggaggtcacagg 251  Q
    |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29158255 aagtttgactgtagt-aaaaaaaacactactgtagtggttgcttcttgacaataatggttaatttcttcatctgaaaacaacaaaattggaggtcacagg 29158157  T
Q  252 ttct 255  Q
    ||||    
T  29158156 ttct 29158153  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 29158729 - 29158670
Alignment:
Q  1 ttaaaacgaggtagtatcttaagtcttaacttacactagattgacaagttttatatagtt 60  Q
    ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  29158729 ttaaaacgaggtagtatcttatgttttaacttgcactagattgacaagttttatatagtt 29158670  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 12123239 - 12123291
Alignment:
Q  65 gactacttattatatttacataggttagggactaaattgaagaaagagtgata 117  Q
    |||||||||| |||||||||||| |||||||||||||||||||| | ||||||    
T  12123239 gactacttatcatatttacatagtttagggactaaattgaagaatgggtgata 12123291  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 35464775 - 35464678
Alignment:
Q  48 gttttatatagttttatgactacttattatatttaca--taggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttattc 145  Q
    |||||||||| ||| | |||||||||||||||||| |  ||  ||| |||||||||||  || | ||||||| ||||||| ||||| |||||||||||||    
T  35464775 gttttatatactttaaggactacttattatatttatatgtactttaaggactaaattg--gagacagtgatattttagggactaaattgatggtttattc 35464678  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 35464868 - 35464913
Alignment:
Q  101 ttgaagaaagagtgatactttagggtctaaactgatggtttattca 146  Q
    ||||||||||||||||| ||||| | ||||| ||||||||||||||    
T  35464868 ttgaagaaagagtgatattttagagactaaattgatggtttattca 35464913  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 47819401 - 47819483
Alignment:
Q  65 gactacttattatatttacataggttagggactaaattgaagaa---agagtgatactttagggtctaaactgatggtttatt 144  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   | ||| ||| ||||||| ||||  ||||||||||||    
T  47819401 gactacttattatatttacatagtttagggactaaattgaagaagagatagtcatagtttagggactaacttgatggtttatt 47819483  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 2886328 - 2886247
Alignment:
Q  65 gactacttattatatttacataggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttattca 146  Q
    ||||| |||||||||||  |||| ||||||  ||||||||||  ||||||||| |||| || ||| | ||||||||||||||    
T  2886328 gactatttattatatttttatagtttaggggataaattgaagggagagtgatagtttaaggactatattgatggtttattca 2886247  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 19568477 - 19568397
Alignment:
Q  65 gactacttattatatttacataggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttattca 146  Q
    ||||| ||| |||||||  |||||| |||||||||| |||||| ||||||||| ||||||| ||||  |||||||| |||||    
T  19568477 gactatttagtatatttttataggt-agggactaaagtgaagagagagtgatagtttagggactaagttgatggttcattca 19568397  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 11626924 - 11626980
Alignment:
Q  89 ttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttattc 145  Q
    ||||| ||||||||||||| ||||||||||||||||  ||| | |||||||||||||    
T  11626924 ttaggaactaaattgaagagagagtgatactttaggagctacattgatggtttattc 11626980  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 4854268 - 4854368
Alignment:
Q  42 tgacaagttttatatagttttatgactacttattatatttacataggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggttt 141  Q
    |||||||||||||||| |   | ||||| |||||||||||| |||  |||||||| |||||| |||  ||||||||||||| ||  |||| |||||||||    
T  4854268 tgacaagttttatatactgcaaggactatttattatatttatatactttagggaccaaattggaga--gagtgatactttatggattaaattgatggttt 4854365  T
Q  142 att 144  Q
    |||    
T  4854366 att 4854368  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 27719640 - 27719563
Alignment:
Q  67 ctacttattatatttacataggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttatt 144  Q
    |||||| ||||||||| |||| ||||||||||||||| ||| ||| ||||| | ||||| ||||  ||||| ||||||    
T  27719640 ctacttgttatatttatatagtttagggactaaattggagagagaatgatagtatagggactaagttgatgctttatt 27719563  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 58404 - 58445
Alignment:
Q  65 gactacttattatatttacataggttagggactaaattgaag 106  Q
    |||||| |||||||||||||||| ||||||||||| ||||||    
T  58404 gactacctattatatttacatagtttagggactaatttgaag 58445  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 2055509 - 2055431
Alignment:
Q  66 actacttattatatttacataggttagggactaaattgaagaaagagtgatactttagggtctaaactgatggtttattca 146  Q
    |||||||||||| | || |||| ||||||||||||||  |||| || ||||| |||| || ||||| ||||||||||||||    
T  2055509 actacttattatttatatatagtttagggactaaatt--agaatgaatgatagtttaaggactaaattgatggtttattca 2055431  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 54254076 - 54254133
Alignment:
Q  65 gactacttattatatttacataggttagggactaaattgaagaaagagtgatacttta 122  Q
    |||||||||||||||||| | |  ||||||||||||||| ||| ||||||||| ||||    
T  54254076 gactacttattatatttatacactttagggactaaattggagagagagtgatagttta 54254133  T

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