View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6212_high_4 (Length: 250)
Name: NF6212_high_4
Description: NF6212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6212_high_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 35090883 - 35091123
Alignment:
| Q |
10 |
gcaaaggcgactggagaaacatctcgcgcaatttcgtcgtgacaaagactccaacacaagtagcaagtcatgcacaaaagtactacataaggcaaaaggt |
109 |
Q |
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| T |
35090883 |
gcaaaggcgactggagaaacatctcgcgcaatttcgtcgtgacaaagactccaacacaagtagcaagtcatgcacaaaagtactacataaggcaaaaggt |
35090982 |
T |
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| Q |
110 |
ttcttctggagggaaagataaaagaagaccaagcattcatgatatcacaactgttactctcacagaaacttcttctccatcagaaaacaagtctttatta |
209 |
Q |
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| T |
35090983 |
ttcttctggagggaaagataaaagaagaccaagcattcatgatatcacaactgtcactctcacagaaacttcttctccatcagaaaacaagtctttatta |
35091082 |
T |
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| Q |
210 |
gtcaatgtgtctcctatgcagcagaaaatgggttggagtac |
250 |
Q |
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| T |
35091083 |
gtcaatgtgtctcctatgcagcagaaaatgggttggagtac |
35091123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 29564866 - 29564956
Alignment:
| Q |
10 |
gcaaaggcgactggagaaacatctcgcgcaatttcgtcgtgacaaagactccaacacaagtagcaagtcatgcacaaaagtactacataag |
100 |
Q |
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| T |
29564866 |
gcaaaggtgattggagaaatatttcgcgcaatttcgtcatcacgagaacaccaactcaagtagcaagccatgctcaaaagtatttcataag |
29564956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 91
Target Start/End: Original strand, 46325944 - 46325975
Alignment:
| Q |
60 |
ccaacacaagtagcaagtcatgcacaaaagta |
91 |
Q |
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| T |
46325944 |
ccaacacaagtagcaagtcatgcacaaaagta |
46325975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 25117027 - 25117086
Alignment:
| Q |
117 |
ggagggaaagataaaagaagaccaagcattcatgatatcacaactgttactctcacagaa |
176 |
Q |
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| T |
25117027 |
ggaggcaaagacaaaagaagagcaagcattcatgacataacaacagttaatctcacagaa |
25117086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 31395118 - 31395174
Alignment:
| Q |
51 |
acaaagactccaacacaagtagcaagtcatgcacaaaagtactacataaggcaaaag |
107 |
Q |
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| T |
31395118 |
acaaagactccaccccaagtagcaagccatgctcaaaagtacgaaaaaaggcaaaag |
31395174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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