View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6212_high_6 (Length: 211)

Name: NF6212_high_6
Description: NF6212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6212_high_6
NF6212_high_6
[»] chr3 (1 HSPs)
chr3 (5-72)||(3958682-3958749)
[»] chr1 (1 HSPs)
chr1 (5-68)||(14002084-14002147)
[»] chr8 (1 HSPs)
chr8 (29-73)||(11307241-11307285)


Alignment Details
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 3958749 - 3958682
Alignment:
Q  5 ggatgtcgaagaatatactagagaatccatatatttaatgtcttaagattttggactaagatatgatg 72  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  3958749 ggatgttgaacaacatactagagaatccatatatttaatgtcttaagattttggattaaaatatgatg 3958682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 14002084 - 14002147
Alignment:
Q  5 ggatgtcgaagaatatactagagaatccatatatttaatgtcttaagattttggactaagatat 68  Q
    |||||| ||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  14002084 ggatgttgaacaacatactagagaattcatatatttaatgtcttaagattttggattaagatat 14002147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 11307241 - 11307285
Alignment:
Q  29 atccatatatttaatgtcttaagattttggactaagatatgatgt 73  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||    
T  11307241 atccatacatttgatgtcttaagattttggattaagatatgatgt 11307285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University