View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6212_low_2 (Length: 450)
Name: NF6212_low_2
Description: NF6212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6212_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 8865194 - 8865643
Alignment:
| Q |
1 |
tgtcactagtaacttggtctttctgcctatatcatgttacagattgaaaagctaagttgactattttcgctatcatgtgatcccgtcatatcttcagttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| | |
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|
| T |
8865194 |
tgtcactagtaacttggtctttctgcccatatcatgttacagattgaaaagctcaagtgactattttcgctatcatgtgatctcgtcatatcttcagtat |
8865293 |
T |
|
| Q |
101 |
cgcaaacattataaaagagaaaggaagttcgcaacacaacatttaggcagaggtactgtgcttttttcaattttcaaagttctaaataaactgcttaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8865294 |
cgcaaacattataaaagagaaaggaagttcggaacacaacatttaggcagaggtactgtgcttttttcaattttcaaagttctaaataaactgcttaaga |
8865393 |
T |
|
| Q |
201 |
tcttgatggtctgtacttgctgtgtgatactgaaaacttaatagtacttttctagattttataaaacgtaatag-acttgctgtgttgtaacattcattt |
299 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8865394 |
tcttgatggtctattcttgctgtgtgatactgaaaacttaatagtacttttctagattttataaaacgtaatagtacttgctgtgttgtaacattcattt |
8865493 |
T |
|
| Q |
300 |
tattacatattcagtataaatcattttattatgtgattgtatatctttcgcttcctcattaaactattcaagctccgccgcggcacttttccttttcctc |
399 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8865494 |
tattacatatttggtataaataattttattatgtggttgtatatctttcgcttcctcattaaactattcaagctccgccgctgcacttttccttttcctg |
8865593 |
T |
|
| Q |
400 |
gactcatacttgcttcttgttgtgtaggttgcttgatgatgtccatctca |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
8865594 |
gactcatacttgcttcttgttgtgtaggttgcttgctgatgttcatctca |
8865643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 11127544 - 11127114
Alignment:
| Q |
1 |
tgtcactagtaacttggtctttctgcctatatcatgttacagattgaaaagctaagttgactattttcgctatcatgtgatcccgtcatatcttcagttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
11127544 |
tgtcactagtaacttggtctttctgcctatatcatgttacagattgaaaagctcaagtgactattttcgctatcatgtgatcccgtcat----------- |
11127456 |
T |
|
| Q |
101 |
cgcaaacattataaaagagaaaggaagttcgcaacacaacatttaggcagaggtactgtgcttttttcaattttcaaagttctaaataaactgcttaaga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11127455 |
---------tataaaagagaaaggaagttcggaacacaatatttatgcagaggtactgtgcttttttcaattttcaaagttctaaataaactgcttaaga |
11127365 |
T |
|
| Q |
201 |
tcttgatggtctgtacttgctgtgtgatactgaaaacttaatagtacttttctagattttataaaacgtaatag-acttgctgtgttgtaacattcattt |
299 |
Q |
| |
|
|||||| || | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
11127364 |
gcttgatagtttatacttgctgtgtgatactgaaaacttaatattacttttctagattttataaaacgtaatagtacttgctgtgttgtaacattcattt |
11127265 |
T |
|
| Q |
300 |
tattacatattcagtataaatcattttattatgtgattgtatatctttcgcttcctcattaaactattcaagctccgccgcggcacttttccttttcctc |
399 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
11127264 |
tattacatattcagtataaataattttattatgtggttgtatatctttcgcttcatcattaaactattcaagctccgccgctgcacttttccttttcctg |
11127165 |
T |
|
| Q |
400 |
gactcatacttgc-ttcttgttgtgtaggttgcttgatgatgtccatctca |
449 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
11127164 |
gactcatacttgctttcttgttgtgtaggttgcttgctgatgttcatctca |
11127114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 11156453 - 11155989
Alignment:
| Q |
1 |
tgtcactagtaacttggtctttctgcctatatcatgttacagattgaaaagctaagttgacta-ttttcgctat-----catgtgatcccgtcatatctt |
94 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| || | | |||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
11156453 |
tgtcactagtaacttggtctttctacctatatcatgttacagattgaagagatcaagtgactatttttcgctatcagaacatgtgatcccatcatatctt |
11156354 |
T |
|
| Q |
95 |
cagtttcgcaaacattataaaagagaaaggaagttcgcaacacaacatttaggcagaggtactgtgcttttttcaattttcaaagttctaaataaactgc |
194 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| ||||||||||| ||||| |||||||||| ||||||| ||||||||||||||||||||| ||| |
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|
| T |
11156353 |
cagtttcgcaagcattataaaagagaaaggaacttcggaacacaacattgaggcataggtactgtgtttttttcgattttcaaagttctaaataaattgc |
11156254 |
T |
|
| Q |
195 |
ttaagatcttgatggtctgtacttgctgtgtgatactgaaaacttaatagtacttttctagattttat---aaaacgtaa---tagacttgct--gtgtt |
286 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| | | || | | |||| || | ||||| |
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|
| T |
11156253 |
tgaagatcttgatggtctatacttgctgtgtgatactgaaaacttactagtacttttcttgattttgttggacaatctcaagttagagttcataggtgtt |
11156154 |
T |
|
| Q |
287 |
gtaacattcattttattacatattcag--tataaatcattttattatgtgattgtatatctttcgcttcctcattaaactattcaagctccgccgcggca |
384 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| ||||||||||| | ||||||||||||| ||||||| | ||| |||||||| ||| || | || |
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|
| T |
11156153 |
gtaacattcattttattacatattcggtatataaataattttattatgcggttgtatatctttcacttcctcgtaaaattattcaagttccaccactgct |
11156054 |
T |
|
| Q |
385 |
cttttccttttcctcgactcatacttgcttcttgttgtgtaggttgcttgatgatgtccatctca |
449 |
Q |
| |
|
|||| |||||||| | |||||||||| ||||||||||| |||||||||| |||||| ||||||| |
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|
| T |
11156053 |
ctttcgcttttcctggcctcatacttgtttcttgttgtgcaggttgcttgttgatgttcatctca |
11155989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 11145278 - 11144811
Alignment:
| Q |
1 |
tgtcactagtaacttggtctttctgcctatatcatgttacagattgaaaagctaagttgactattttcgctat-----catgtgatcccgtcatatcttc |
95 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||| |||| | |||||||||| ||||| ||||||||||| |||||||||| |
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|
| T |
11145278 |
tgtcactattaacttggtctttctacctatatcatgttacagattgaagagctcaagtgactatttttgctataagaacatgtgatcccatcatatcttc |
11145179 |
T |
|
| Q |
96 |
agtttcgcaaacattataaaagagaaaggaagttcgcaacacaacatttaggcagaggtactgtgcttttttca-attttcaaagttctaaataaactgc |
194 |
Q |
| |
|
|||||||||| |||||||| ||||||||| ||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| ||| |
|
|
| T |
11145178 |
agtttcgcaagcattataattgagaaaggacgttcggaacacaacattgaggcagaggtactgtgtttttttcttattttcaaagttctaaataaattgc |
11145079 |
T |
|
| Q |
195 |
ttaagatcttgatggtctgtacttgctgtgtgatactgaaaacttaatagtacttttctagattttat---aaaacgtaa---tagacttgct--gtgtt |
286 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||| |||||| | | || | | |||| || | ||||| |
|
|
| T |
11145078 |
ttaagatcttgatggtctgcacttgctgtgtgatactgaaagcttattagtacttttcttgattttgttggacaatctgaagttagatttcataggtgtt |
11144979 |
T |
|
| Q |
287 |
gtaacattcattttattacatattcag--tataaatcattttattatgtgattgtatatctttcgcttcctcattaaactattcaagctccgccgcggca |
384 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| ||||||||||| | ||||||||||||| ||||||| | ||| |||||||| |||||| | || |
|
|
| T |
11144978 |
gtaacattcattttattacatatttggtatataaataattttattatgcggttgtatatctttcacttcctcgtaaaattattcaagttccgccactgct |
11144879 |
T |
|
| Q |
385 |
cttttccttttcctcgactc---atacttgcttcttgttgtgtaggttgcttgatgatgtccatctca |
449 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
11144878 |
ctttcgcttttcctggactcataatacttgcttcttgtggtgtaggttgcttgctgatgttcatctca |
11144811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 10892863 - 10893057
Alignment:
| Q |
1 |
tgtcactagtaacttggtctttctgcctatatcatgttacagattgaaaagctaagttgactattttcgctatcatgtgatcccgtcatatcttcagttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10892863 |
tgtcactagtaacttggtctttctgcctatatcatgttacagattgaaatgctcaagtgactattttcgctatcatgtgatcccgtcatatcttcagttt |
10892962 |
T |
|
| Q |
101 |
cgcaaacattataaaagagaaaggaagttcgcaacacaacatttaggcagaggtactgtgcttttttcaattttcaaagttctaaataaactgct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10892963 |
cgcaaacattataaaagagaaaggaagttctcaacacaacatttaggcagaggtactgtgcttttttcaattttcaaagttctaaataaactgct |
10893057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 251 - 449
Target Start/End: Original strand, 10893057 - 10893256
Alignment:
| Q |
251 |
tctagattttataaaacgtaatag-acttgctgtgttgtaacattcattttattacatattcagtataaatcattttattatgtgattgtatatctttcg |
349 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
10893057 |
tctagattttataaaacgtaatagtacttgctgtgttgtaacattcattttattacatattcagtataaataattttattatgtggttgtatatctttcg |
10893156 |
T |
|
| Q |
350 |
cttcctcattaaactattcaagctccgccgcggcacttttccttttcctcgactcatacttgcttcttgttgtgtaggttgcttgatgatgtccatctca |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
10893157 |
cttcctcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgcttcttgttgtgtaggttgcttgctgatgttcatctca |
10893256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 11193133 - 11193178
Alignment:
| Q |
215 |
acttgctgtgtgatactgaaaacttaatagtacttttctagatttt |
260 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| |||||| |
|
|
| T |
11193133 |
acttgctgtgtaatactgaaaacttagtagtacttttcttgatttt |
11193178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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