View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6212_low_3 (Length: 339)
Name: NF6212_low_3
Description: NF6212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6212_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 142 - 323
Target Start/End: Complemental strand, 243977 - 243796
Alignment:
| Q |
142 |
gtgtgtggaatggaatatagaaaaaagttggaaattaagagggaatgtttttgtcaacctctatcataaaccaaattaaacatgactttgcttcttggca |
241 |
Q |
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| T |
243977 |
gtgtgtggaatggaatatagaaaaaagttggaaattaagagggaatgtttttgtcaacctctatcataaaccaaattaaacatgactttgcttcttggca |
243878 |
T |
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| Q |
242 |
tcattgtgttgctcatatttctttgcaaattcactaatttatgagcataaacactttaattaccatattatgagcacaacat |
323 |
Q |
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| T |
243877 |
tcattgtgttgctcatatttctttgcaaattcactaatttatgagcataaacactttaattaccatattatgagcacaacat |
243796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 244118 - 244008
Alignment:
| Q |
1 |
tactcttgtgtcctcctcctatggacttgcatctctcccacgtttttgtgatgaggcctattttcttgttcccttttccttgcttcatgttcttgccaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244118 |
tactcttgtgtcctcctcctatggacttgcatctctcccacgtttttgtgatgaggcctattttcttgttcccttttccttgcttcatgttcttgccaat |
244019 |
T |
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| Q |
101 |
atccatttgtc |
111 |
Q |
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| T |
244018 |
atccatttgtc |
244008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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