View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6213_high_10 (Length: 349)

Name: NF6213_high_10
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6213_high_10
NF6213_high_10
[»] chr2 (2 HSPs)
chr2 (19-143)||(22018619-22018743)
chr2 (24-143)||(20714180-20714299)
[»] chr4 (2 HSPs)
chr4 (66-139)||(21261870-21261943)
chr4 (253-320)||(21261605-21261672)
[»] scaffold0097 (1 HSPs)
scaffold0097 (24-143)||(18019-18138)
[»] chr8 (2 HSPs)
chr8 (24-143)||(22527881-22528000)
chr8 (24-143)||(25990502-25990621)
[»] chr6 (1 HSPs)
chr6 (24-143)||(33094570-33094689)
[»] chr5 (1 HSPs)
chr5 (24-143)||(13173069-13173188)
[»] chr3 (1 HSPs)
chr3 (24-143)||(20986656-20986775)
[»] scaffold1789 (1 HSPs)
scaffold1789 (70-143)||(1090-1163)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 22018743 - 22018619
Alignment:
Q  19 gaaccagcttccttgcctaaagtatacatgtaccttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgt 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  22018743 gaaccaacttccttgcctaaagtatacatgtaccttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccacaaagaaatgt 22018644  T
Q  119 tacatctcattgtgcccgactatcc 143  Q
    |||||||||||||||||||||||||    
T  22018643 tacatctcattgtgcccgactatcc 22018619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 20714299 - 20714180
Alignment:
Q  24 agcttccttgcctaaagtatacatgtaccttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacat 123  Q
    |||||||||||||   || |||||| |||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |    
T  20714299 agcttccttgccttgtgtctacatgcaccttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttacct 20714200  T
Q  124 ctcattgtgcccgactatcc 143  Q
      |||||||||  |||||||    
T  20714199 tacattgtgccgaactatcc 20714180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 21261943 - 21261870
Alignment:
Q  66 tgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgact 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21261943 tgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgact 21261870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 21261672 - 21261605
Alignment:
Q  253 atagtttgatgacaattgttttggtagttaattattattgtcattctggtgctataaagtggaagata 320  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  21261672 atagtttgatgacaattgttttggtaattaattattattgtcattctggtgctataaagtgaaagata 21261605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 18138 - 18019
Alignment:
Q  24 agcttccttgcctaaagtatacatgtaccttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacat 123  Q
    |||||||||||||   || |||||| |||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |    
T  18138 agcttccttgccttgtgtctacatgcaccttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttacct 18039  T
Q  124 ctcattgtgcccgactatcc 143  Q
      |||||||||  |||||||    
T  18038 tacattgtgccgaactatcc 18019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 22528000 - 22527881
Alignment:
Q  24 agcttccttgcctaaagtatacatgtaccttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacat 123  Q
    |||||||||||||   || |||||| |||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |    
T  22528000 agcttccttgccttgtgtctacatgcaccttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttacct 22527901  T
Q  124 ctcattgtgcccgactatcc 143  Q
      |||||||||  |||||||    
T  22527900 tacattgtgccgaactatcc 22527881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 25990621 - 25990502
Alignment:
Q  24 agcttccttgcctaaagtatacatgtaccttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacat 123  Q
    |||||||||||||   || |||||| |||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |    
T  25990621 agcttccttgccttgtgtctacatgcaccttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttacct 25990522  T
Q  124 ctcattgtgcccgactatcc 143  Q
      |||||||||  |||||||    
T  25990521 tacattgtgccgaactatcc 25990502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 33094570 - 33094689
Alignment:
Q  24 agcttccttgcctaaagtatacatgtaccttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacat 123  Q
    |||||||||||||   || |||||| |||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |    
T  33094570 agcttccttgccttgtgtctacatgcaccttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttacct 33094669  T
Q  124 ctcattgtgcccgactatcc 143  Q
      |||||||||  |||||||    
T  33094670 tacattgtgccgaactatcc 33094689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 13173188 - 13173069
Alignment:
Q  24 agcttccttgcctaaagtatacatgtaccttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacat 123  Q
    |||||||||||||   || |||||| |||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |    
T  13173188 agcttccttgccttgtgtctacatgcaccttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttacct 13173089  T
Q  124 ctcattgtgcccgactatcc 143  Q
      |||||||||  |||||||    
T  13173088 tacattgtgccgaactatcc 13173069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 20986656 - 20986775
Alignment:
Q  24 agcttccttgcctaaagtatacatgtaccttgttaagaatgctgatgcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacat 123  Q
    |||||||||||||   || |||||| |||||||| |  || | || ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |    
T  20986656 agcttccttgccttgtgtctacatgcaccttgttcaacatccagaagcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttacct 20986755  T
Q  124 ctcattgtgcccgactatcc 143  Q
      |||||||||  |||||||    
T  20986756 tacattgtgccgaactatcc 20986775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1789 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1789
Description:

Target: scaffold1789; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 1090 - 1163
Alignment:
Q  70 gcattgaaagcttttaatggaattccaattgataaccgcaaggaaatgttacatctcattgtgcccgactatcc 143  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||||||| |  |||||||||  |||||||    
T  1090 gcattgaaagcttttaatggaattccagttgataagcgtaaggaaatgttaccttacattgtgccgaactatcc 1163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University