View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6213_high_13 (Length: 315)
Name: NF6213_high_13
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 36737358 - 36737053
Alignment:
| Q |
1 |
aaattgtaaaagggaatggctgaaacagacaattaaaccggtggccgtggcgactcaacaaccgccgccgtagctgctgaagcagatgtaccttcaccgg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36737358 |
aaattgtaaaagggaatggccgaaacagacaattaaaccggtggccgtggcgactcaacaaccgccgccgtagctgctgaagcagatgtaccttcaccgg |
36737259 |
T |
|
| Q |
101 |
cgctactagccacccttggtgacctcatcgacgaggctcttacaaggaaaggtggcgccattgtaaaaagccaccggtctgataataaaccccggtccaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36737258 |
cgctactagccacccttggtgacctcatcgacgaggctcttacaaggaaaggtggcgccattgtaaaaacccaccggtctgataataaaccccggtccaa |
36737159 |
T |
|
| Q |
201 |
ccgccttacagacttccctctactacttccctcaccaccaccggttcgataacccctacgtgaactagtttctcttggcaacacaactaagcttctagcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36737158 |
ccgccttacagacttccctctactacttccctcaccaccaccggttcgataacccctacgtgaactagtttctcttggcaacacaactaagcttctagcc |
36737059 |
T |
|
| Q |
301 |
ctatgc |
306 |
Q |
| |
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|||||| |
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| T |
36737058 |
ctatgc |
36737053 |
T |
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